{ "_id": "6a37accb3efcd9bda4424c61", "Package": "XINA", "Type": "Package", "Title": "Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network\nAnalysis", "Version": "1.30.0", "biocViews": "SystemsBiology, Proteomics, RNASeq, Network", "Author": "Lang Ho Lee and Sasha A. Singh\n", "Maintainer": "Lang Ho Lee and Sasha A. Singh\n", "Authors@R": "c(person(\"Lang Ho\", \"Lee\", email=\"lhlee@bwh.harvard.edu\", \nrole = c(\"aut\", \"cre\")),\nperson(\"Sasha\", \"Singh\", email=\"sasingh@bwh.harvard.edu\",\nrole = c(\"aut\")))", "Description": "The aim of XINA is to determine which proteins exhibit\nsimilar patterns within and across experimental conditions,\nsince proteins with co-abundance patterns may have common\nmolecular functions. XINA imports multiple datasets, tags\ndataset in silico, and combines the data for subsequent\nsubgrouping into multiple clusters. The result is a single\noutput depicting the variation across all conditions. XINA, not\nonly extracts coabundance profiles within and across\nexperiments, but also incorporates protein-protein interaction\ndatabases and integrative resources such as KEGG to infer\ninteractors and molecular functions, respectively, and produces\nintuitive graphical outputs.", "Copyright": "XINA combines multiple quantitative (kinetics) datasets from\nomics studies into a single input dataset for clustering.\nCopyright(C)2018 Lang Ho Lee, Arda Halu, Stephanie Morgan,\nHiroshi Iwata, Masanori Aikawa, and Sasha A. Singh This program\nis free software: you can redistribute it and/or modify it\nunder the terms of the GNU General Public License as published\nby the Free Software Foundation, either version 3 of the\nLicense, any later version. This program is distributed in the\nhope that it will be useful, but WITHOUT ANY WARRANTY; without\neven the implied warranty of MERCHANTABILITY or FITNESS FOR A\nPARTICULAR PURPOSE. See the GNU General Public License for more\ndetails. 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Singh, SASINGH@BWH.HARVARD.EDU M.\nAikawa, MAIKAWA@BWH.HARVARD.EDU - Mailing address: Department\nof Medicine, Cardiovascular Division Center for Interdisciplin\nary Cardiovascular Sciences 3 Blackfan Street, 17th Floor\nBoston, MA 02115 USA", "License": "GPL-3", "VignetteBuilder": "knitr", "LazyData": "FALSE", "RoxygenNote": "6.1.1", "Encoding": "UTF-8", "Date": "2019-01-31", "git_url": "https://git.bioconductor.org/packages/xina", "git_branch": "master", "git_last_commit": "897b60b", "Config/pak/sysreqs": "libglpk-dev libpng-dev libxml2-dev libssl-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:48:37 UTC", "RemoteUrl": "https://github.com/bioc/XINA", "RemoteRef": "RELEASE_3_23", "RemoteSha": "37aebe6cdc840a0a3c2707dc93e7db08b53f2448", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 09:14:25 UTC", "User": "root" }, "MD5sum": "01ee18387ccae7173d00317422a4a30f", "_user": "bioc-release", "_type": "src", "_file": 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