{ "_id": "6aca1c26fe5cc25786e84bdc", "Package": "XhybCasneuf", "Version": "1.50.0", "Date": "2007-06-21", "Title": "EBI/PSB cross-hybridisation study package", "Author": "Tineke Casneuf ", "Maintainer": "Tineke Casneuf ", "Description": "Cross-hybridisation study on the ATH1 Affymetrix GeneChip", "License": "Artistic-2.0", "biocViews": "ExperimentData, Tissue, MicroarrayData, TissueMicroarrayData", "Config/pak/sysreqs": "libpng-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:22:45 UTC", "RemoteUrl": "https://github.com/bioc/XhybCasneuf", "RemoteRef": "RELEASE_3_23", "RemoteSha": "9b776f662592f98930dfd8b6c3a9f5ae45c6d4f5", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:01:09 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "XhybCasneuf_1.50.0.tar.gz", "_fileid": "https://r2.ropensci.org/3bbd85318f89ebba3945cff77acd04de32a3863a9dcbdd3dddabe94c8e661e8d", "_filesize": 2550173, "_sha256": "3bbd85318f89ebba3945cff77acd04de32a3863a9dcbdd3dddabe94c8e661e8d", "_expires": "2027-01-18T11:06:12.000Z", "_created": "2026-10-10T11:01:09.000Z", "_published": "2026-10-10T11:06:14.457Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046737764", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 4, "note": 15 }, "_upstream": "https://github.com/bioc/XhybCasneuf", "_commit": { "id": "9b776f662592f98930dfd8b6c3a9f5ae45c6d4f5", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777378965 }, "_maintainer": { "name": "Tineke Casneuf", "email": "tine@ebi.ac.uk" }, "_distro": "resolute", "_jobs": [ { "job": 114198275823, "time": 146, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11668310895" }, { "job": 114198275858, "time": 259, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11666744938" }, { "job": 114198275866, "time": 206, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11668056138" }, { "job": 114197743163, "time": 187, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668475022" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "affy", "role": "Depends" }, { "package": "ath1121501cdf", "role": "Depends" }, { "package": "tinesath1cdf", "role": "Depends" }, { "package": "RColorBrewer", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "grid", "role": "Depends" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.51.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.50.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "tissue", "microarraydata", "tissuemicroarraydata", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 1, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/XhybCasneuf.html" ], "_cranurl": false, "_exports": [ "plotExample", "runSimulation" ], "_datasets": [ { "name": "AffysTissue", "title": "Affymetrix' CDF probe set pairs", "object": "AffysTissue", "file": "AffysTissue.noBl.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "meant2hit", "PSofTarget", "peCC" ], "rows": 42826, "table": true, "tojson": true }, { "name": "AffysTissue.noBl", "title": "Affymetrix' CDF probe set pairs", "object": "AffysTissue.noBl", "file": "AffysTissue.noBl.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "meant2hit", "PSofTarget", "peCC" ], "rows": 11361, "table": true, "tojson": true }, { "name": "AffysTissueMC", "title": "Affymetrix' CDF probe set pairs", "object": "AffysTissueMC", "file": "AffysTissueMC.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "meant2hit", "PSofTarget", "peCC", "Mcor" ], "rows": 42815, "table": true, "tojson": true }, { "name": "CustomsTissue", "title": "Custom-made CDF's probe set pairs", "object": "CustomsTissue", "file": "CustomsTissue.noBl.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "peCC" ], "rows": 40094, "table": true, "tojson": true }, { "name": "CustomsTissue.noBl", "title": "Custom-made CDF's probe set pairs", "object": "CustomsTissue.noBl", "file": "CustomsTissue.noBl.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "peCC" ], "rows": 10702, "table": true, "tojson": true }, { "name": "CustomsTissueMC", "title": "Custom-made CDF's probe set pairs", "object": "CustomsTissueMC", "file": "CustomsTissueMC.rda", "class": [ "data.frame" ], "fields": [ "pr", "target", "alSum", "peCC", "Mcor" ], "rows": 39424, "table": true, "tojson": true }, { "name": "ex1", "title": "Cross-hybridisation example", "object": "ex1", "file": "ex1.rda", "class": [ "XhybExamples" ], "fields": [], "table": false, "tojson": false }, { "name": "ex2", "title": "Cross-hybridisation example", "object": "ex2", "file": "ex2.rda", "class": [ "XhybExamples" ], "fields": [], "table": false, "tojson": false }, { "name": "ex3", "title": "Cross-hybridisation example", "object": "ex3", "file": "ex3.rda", "class": [ "XhybExamples" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "AffysTissue", "title": "Affymetrix' CDF probe set pairs", "topics": [ "AffysTissue", "AffysTissue.noBl", "AffysTissueMC" ] }, { "page": "CustomsTissue", "title": "Custom-made CDF's probe set pairs", "topics": [ "CustomsTissue", "CustomsTissue.noBl", "CustomsTissueMC" ] }, { "page": "ex1", "title": "Cross-hybridisation example", "topics": [ "ex1", "ex2", "ex3" ] }, { "page": "runSimulation", "title": "Cross-hybridisation simulation", "topics": [ "runSimulation" ] }, { "page": "XhybExamples-class", "title": "Class \"XhybExamples\"", "topics": [ "plotExample", "plotExample,XhybExamples-method", "XhybExamples-class" ] } ], "_rundeps": [ "affy", "affyio", "AnnotationDbi", "askpass", "ath1121501cdf", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "preprocessCore", "R6", "RColorBrewer", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "tinesath1cdf", "vctrs", "XVector" ], "_vignettes": [ { "source": "Xhyb.Rnw", "filename": "Xhyb.pdf", "title": "Xhyb", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:36:05", "modified": "2013-11-01 20:36:05", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "xhybcasneuf", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/XhybCasneuf", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.50.0", "date": "2026-10-10T11:05:07.000Z", "distro": "resolute", "commit": "9b776f662592f98930dfd8b6c3a9f5ae45c6d4f5", "fileid": "https://r2.ropensci.org/add8d9163f1e78b26ed9838c52c05837a1cd1f28559d8949d4d54ccde2853c1f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046737764" }, { "r": "4.6.1", "os": "linux", "version": "1.50.0", "date": "2026-10-10T11:04:24.000Z", "distro": "resolute", "commit": "9b776f662592f98930dfd8b6c3a9f5ae45c6d4f5", "fileid": "https://r2.ropensci.org/29d3ee750423b5fcdaf6f8ebe2367caa524c1b033210c7ecec9399dffaab66a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046737764" } ] }