{
  "_id": "6ad317a96814ce853b657ede",
  "Package": "ZarrArray",
  "Title": "Bring Zarr datasets in R as DelayedArray objects",
  "Description": "The ZarrArray package leverages the Rarr package to bring\nZarr datasets in R as DelayedArray objects. The main class in\nthe package is the ZarrArray class. A ZarrArray object is an\narray-like object that represents a Zarr dataset in R.\nZarrArray objects are DelayedArray derivatives and therefore\nsupport all operations (delayed or block-processed) supported\nby DelayedArray objects.",
  "biocViews": "Infrastructure, DataRepresentation, DataImport",
  "URL": "https://bioconductor.org/packages/ZarrArray",
  "BugReports": "https://github.com/Bioconductor/ZarrArray/issues",
  "Version": "1.0.1",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "Authors@R": "c(\nperson(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"),\nemail=\"hpages.on.github@gmail.com\",\ncomment=c(ORCID=\"0009-0002-8272-4522\")),\nperson(\"Mike\", \"Smith\", role=\"aut\",\ncomment=c(ORCID=\"0000-0002-7800-3848\")),\nperson(\"Hugo\", \"Gruson\", role=\"aut\",\nemail=\"hugo.gruson@embl.de\",\ncomment=c(ORCID=\"0000-0002-4094-1476\")),\nperson(\"Artür\", \"Manukyan\", role=\"aut\",\nemail=\"artur-man@hotmail.com\",\ncomment=c(ORCID=\"0000-0002-0441-9517\")),\nperson(\"Levi\", \"Waldron\", role=\"fnd\",\nemail=\"levi.waldron@sph.cuny.edu\",\ncomment=c(ORCID=\"0000-0003-2725-0694\")))",
  "VignetteBuilder": "knitr",
  "Collate": "utils.R options.R ZarrArraySeed-class.R ZarrArray-class.R\nwriteZarrArray-auto-args.R writeZarrArray.R zzz.R",
  "Config/pak/sysreqs": "libblosc-dev libxml2-dev libzstd-dev libssl-dev\nzlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-07-19 02:32:54 UTC",
  "RemoteUrl": "https://github.com/bioc/ZarrArray",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "99e17309674b2372fe685f39795182cd40a349ad",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-17 06:32:06 UTC",
    "User": "root"
  },
  "Author": "Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>),\nMike Smith [aut] (ORCID: <https://orcid.org/0000-0002-7800-3848>),\nHugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>),\nArtür Manukyan [aut] (ORCID: <https://orcid.org/0000-0002-0441-9517>),\nLevi Waldron [fnd] (ORCID: <https://orcid.org/0000-0003-2725-0694>)",
  "Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "ZarrArray_1.0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/a2a8e1cb2582a4e351d22befa1cb3eb40576478fa8c1578983f78b0544c3aebb",
  "_filesize": 148294,
  "_sha256": "a2a8e1cb2582a4e351d22befa1cb3eb40576478fa8c1578983f78b0544c3aebb",
  "_expires": "2027-01-25T06:37:27.000Z",
  "_created": "2026-10-17T06:32:06.000Z",
  "_published": "2026-10-17T06:37:29.538Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 3
  },
  "_upstream": "https://github.com/bioc/ZarrArray",
  "_commit": {
    "id": "99e17309674b2372fe685f39795182cd40a349ad",
    "author": "Hervé Pagès <hpages.on.github@gmail.com>",
    "committer": "Hervé Pagès <hpages.on.github@gmail.com>",
    "message": "ZarrArray 1.0.1: Add missing package anchors to Rd \\link{} targets\n",
    "time": 1784428374
  },
  "_maintainer": {
    "name": "Hervé Pagès",
    "email": "hpages.on.github@gmail.com",
    "login": "hpages",
    "linkedin": "in/hervé-pagès-5038527",
    "description": "",
    "uuid": 8810451,
    "orcid": "0009-0002-8272-4522"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 117331255439,
      "time": 147,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12092906385"
    },
    {
      "job": 117331255533,
      "time": 266,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12092921440"
    },
    {
      "job": 117331255758,
      "time": 261,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12092532111"
    },
    {
      "job": 117331255646,
      "time": 171,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "12092966134"
    },
    {
      "job": 117331255596,
      "time": 204,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12092098561"
    },
    {
      "job": 117330517563,
      "time": 233,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092264364"
    },
    {
      "job": 117331255534,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12093110365"
    },
    {
      "job": 117331255603,
      "time": 176,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "12092368783"
    },
    {
      "job": 117331255552,
      "time": 164,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "12093200131"
    },
    {
      "job": 117331255585,
      "time": 166,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12092727250"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "SparseArray",
      "role": "Depends"
    },
    {
      "package": "DelayedArray",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "S4Arrays",
      "role": "Imports"
    },
    {
      "package": "Rarr",
      "version": ">= 1.11.33",
      "role": "Imports"
    },
    {
      "package": "paws.storage",
      "role": "Suggests"
    },
    {
      "package": "HDF5Array",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 8,
  "_updates": [
    {
      "week": "2026-04",
      "n": 1
    },
    {
      "week": "2026-05",
      "n": 8
    },
    {
      "week": "2026-14",
      "n": 4
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 1
    },
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-29",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.1.7",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.0.1",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "infrastructure",
    "datarepresentation",
    "dataimport",
    "bioconductor-package",
    "core-package",
    "u24ca289073"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "hpages",
      "count": 25,
      "uuid": 8810451
    },
    {
      "user": "bisaloo",
      "count": 4,
      "uuid": 10783929
    },
    {
      "user": "jwokaty",
      "count": 2,
      "uuid": 1744257
    },
    {
      "user": "artur-man",
      "count": 2,
      "uuid": 39335576
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 477,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 794,
    "source": "https://www.bioconductor.org/packages/stats/bioc/ZarrArray"
  },
  "_devurl": "https://github.com/bioconductor/zarrarray",
  "_searchresults": 13,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ZarrArray.html"
  ],
  "_homeurl": "https://github.com/bioconductor/zarrarray",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "chunkdim",
    "coerce",
    "DelayedArray",
    "extract_array",
    "get_writeZarrArray_auto_chunkdim",
    "get_writeZarrArray_auto_path",
    "get_writeZarrArray_chunk_maxlen",
    "get_writeZarrArray_chunk_shape",
    "get_writeZarrArray_dump_dir",
    "matrixClass",
    "path",
    "set_writeZarrArray_chunk_maxlen",
    "set_writeZarrArray_chunk_shape",
    "set_writeZarrArray_dump_dir",
    "show",
    "type",
    "write_block",
    "writeZarrArray",
    "ZarrArray",
    "ZarrArraySeed",
    "ZarrRealizationSink"
  ],
  "_help": [
    {
      "page": "writeZarrArray",
      "title": "Write an array-like object to disk in Zarr format",
      "topics": [
        "chunkdim,ZarrRealizationSink-method",
        "class:ZarrRealizationSink",
        "coerce,ANY,ZarrArray-method",
        "coerce,DelayedArray,ZarrArray-method",
        "coerce,DelayedMatrix,ZarrMatrix-method",
        "coerce,ZarrRealizationSink,DelayedArray-method",
        "coerce,ZarrRealizationSink,ZarrArray-method",
        "coerce,ZarrRealizationSink,ZarrArraySeed-method",
        "type,ZarrRealizationSink-method",
        "writeZarrArray",
        "write_block,ZarrRealizationSink-method",
        "ZarrRealizationSink",
        "ZarrRealizationSink-class"
      ]
    },
    {
      "page": "writeZarrArray-auto-args",
      "title": "Control writeZarrArray's automatic argument values",
      "topics": [
        "get_writeZarrArray_auto_chunkdim",
        "get_writeZarrArray_auto_path",
        "get_writeZarrArray_chunk_maxlen",
        "get_writeZarrArray_chunk_shape",
        "get_writeZarrArray_dump_dir",
        "set_writeZarrArray_chunk_maxlen",
        "set_writeZarrArray_chunk_shape",
        "set_writeZarrArray_dump_dir",
        "writeZarrArray-auto-args",
        "writeZarrArray_auto_args"
      ]
    },
    {
      "page": "ZarrArray-class",
      "title": "Zarr datasets as DelayedArray objects",
      "topics": [
        "class:ZarrArray",
        "class:ZarrMatrix",
        "coerce,ZarrArray,ZarrMatrix-method",
        "coerce,ZarrMatrix,ZarrArray-method",
        "DelayedArray,ZarrArraySeed-method",
        "matrixClass,ZarrArray-method",
        "ZarrArray",
        "ZarrArray-class",
        "ZarrMatrix",
        "ZarrMatrix-class"
      ]
    },
    {
      "page": "ZarrArraySeed-class",
      "title": "ZarrArraySeed objects",
      "topics": [
        "chunkdim,ZarrArraySeed-method",
        "class:ZarrArraySeed",
        "dim,ZarrArraySeed-method",
        "extract_array,ZarrArraySeed-method",
        "path,ZarrArraySeed-method",
        "show,ZarrArraySeed-method",
        "type,ZarrArraySeed-method",
        "ZarrArraySeed",
        "ZarrArraySeed-class"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/ZarrArray/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "base64enc",
    "BiocGenerics",
    "cli",
    "curl",
    "DelayedArray",
    "digest",
    "generics",
    "glue",
    "httr2",
    "IRanges",
    "jsonlite",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "openssl",
    "paws.common",
    "paws.storage",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "Rarr",
    "Rcpp",
    "rlang",
    "S4Arrays",
    "S4Vectors",
    "SparseArray",
    "sys",
    "vctrs",
    "withr",
    "xml2",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "ZarrArray_overview.Rmd",
      "filename": "ZarrArray_overview.html",
      "title": "ZarrArray overview",
      "author": "Hervé Pagès",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install and load the package",
        "ZarrArray objects",
        "Construction",
        "Array and matrix operations",
        "Other operations",
        "Write an array-like object to disk in Zarr format",
        "Session information"
      ],
      "created": "2026-01-28 21:06:31",
      "modified": "2026-04-04 00:09:37",
      "commits": 5
    }
  ],
  "_score": 7.272305844402087,
  "_indexed": false,
  "_nocasepkg": "zarrarray",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/ZarrArray",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-10-17T06:35:15.000Z",
      "distro": "resolute",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/613f27993f9abb1b6667acdc1221346c1f68ab63123fa1c098632318df008e93",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-10-17T06:35:16.000Z",
      "distro": "resolute",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/468bbefd4c2e01db00dd847f01030c7a9ffd4d0f55cd4eb29ea7e1443331218b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-10-17T06:34:30.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/8cdf94c5338ecfaa501d714643467ac9d4691411043dde0bcfc6601459259ffa",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-10-17T06:34:27.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/cd40486904eeda5da421cc179130e5e33144d8f4491831a5f0fa95ffa2c5debb",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-10-17T06:34:32.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/a8e571b8215206999d152af6eb5f1fb271e22e86ba1d9e5dea74fbc1d67a209f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-10-17T06:33:40.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/8d77758f0772343c8bd145376f8dc013deb9de1cee7a6e159d345edc2e18bfb1",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-10-17T06:33:32.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/68e3e69400c4e3a48e8b7a9a9aae0af5b2ddf6b2d9b391cf9ee00725ed92c75f",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-10-17T06:33:39.000Z",
      "commit": "99e17309674b2372fe685f39795182cd40a349ad",
      "fileid": "https://r2.ropensci.org/7998e3c22aa2762880ace17c9b87de39b609e28a04721eb498fced4428170210",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/39010034782"
    }
  ]
}