{ "_id": "6a196d5aacfb0bcc41deb2ae", "Package": "a4Classif", "Type": "Package", "Title": "Automated Affymetrix Array Analysis Classification Package", "Version": "1.60.0", "Date": "2021-07-13", "Authors@R": "c(\nperson(given = \"Willem\", family = \"Talloen\", role = \"aut\"),\nperson(given = \"Tobias\", family = \"Verbeke\", role = \"aut\", email = \"tobias.verbeke@openanalytics.eu\"),\nperson(given = \"Laure\", family = \"Cougnaud\", role = \"cre\", email = \"laure.cougnaud@openanalytics.eu\")\n)", "Description": "Functionalities for classification of Affymetrix\nmicroarray data, integrating within the Automated Affymetrix\nArray Analysis set of packages.", "License": "GPL-3", "biocViews": "Microarray, GeneExpression, Classification", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.1", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:35:22 UTC", "RemoteUrl": "https://github.com/bioc/a4Classif", "RemoteRef": "RELEASE_3_23", "RemoteSha": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 08:42:08 UTC", "User": "root" }, "Author": "Willem Talloen [aut],\nTobias Verbeke [aut],\nLaure Cougnaud [cre]", "Maintainer": "Laure Cougnaud ", "MD5sum": "966c3af20b08b433fb3b44335361f612", "_user": "bioc-release", "_type": "src", "_file": "a4Classif_1.60.0.tar.gz", "_fileid": "d6bdf19a1729abdd565b9680971c382ee782206e8fdeaea2bff3e3cf28ed7c62", "_filesize": 438468, "_sha256": "d6bdf19a1729abdd565b9680971c382ee782206e8fdeaea2bff3e3cf28ed7c62", "_created": "2026-05-29T08:42:08.000Z", "_published": "2026-05-29T10:41:30.500Z", "_jobs": [ { "job": 78467586948, "time": 179, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7286723563" }, { "job": 78467586998, "time": 225, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7286737770" }, { "job": 78467586985, "time": 257, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7286746789" }, { "job": 78467587050, "time": 167, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7288781817" }, { "job": 78467587044, "time": 158, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7288792157" }, { "job": 78466966508, "time": 253, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7286669264" }, { "job": 78467586953, "time": 140, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7286712360" }, { "job": 78467587032, "time": 523, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7286827349" }, { "job": 78467587014, "time": 459, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7286808224" }, { "job": 78467587042, "time": 459, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7286808544" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/a4Classif", "_commit": { "id": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379722 }, "_maintainer": { "name": "Laure Cougnaud", "email": "laure.cougnaud@openanalytics.eu", "login": "lcougnaud", "description": "", "uuid": 15339154 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "a4Core", "role": "Depends" }, { "package": "a4Preproc", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "ROCR", "role": "Imports" }, { "package": "pamr", "role": "Imports" }, { "package": "glmnet", "role": "Imports" }, { "package": "varSelRF", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "ALL", "role": "Suggests" }, { "package": "hgu95av2.db", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.61.0", "bioc": "3.24" }, { "branch": "release", "version": "1.60.0", "bioc": "3.23" } ], "_topics": [ "microarray", "geneexpression", "classification" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 504, "source": "https://www.bioconductor.org/packages/stats/bioc/a4Classif" }, "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/a4Classif.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "lassoClass", "pamClass", "rfClass", "ROCcurve", "topTable" ], "_help": [ { "page": "lassoClass", "title": "Classify using the Lasso", "topics": [ "lassoClass" ] }, { "page": "pamClass", "title": "Classify using Prediction Analysis for MicroArrays", "topics": [ "pamClass" ] }, { "page": "rfClass", "title": "Classify using Random Forests", "topics": [ "rfClass" ] }, { "page": "ROCcurve", "title": "Receiver operating curve", "topics": [ "ROCcurve" ] }, { "page": "topTable-pamClass-method", "title": "Top table for 'pamClass' object", "topics": [ "topTable,pamClass-method" ] }, { "page": "topTable-rfClass-method", "title": "Top table for 'rfClass' object", "topics": [ "topTable,rfClass-method" ] } ], "_rundeps": [ "a4Core", "a4Preproc", "Biobase", "BiocGenerics", "bitops", "caTools", "cluster", "codetools", "foreach", "generics", "glmnet", "gplots", "gtools", "iterators", "KernSmooth", "lattice", "Matrix", "pamr", "randomForest", "Rcpp", "RcppEigen", "ROCR", "shape", "survival", "varSelRF" ], "_vignettes": [ { "source": "a4Classif-vignette.Rmd", "filename": "a4Classif-vignette.html", "title": "Vignette of the a4Classif package", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Classify microarray data", "Lasso regression", "PAM regression", "Random forest", "ROC curve", "Appendix", "Session information" ], "created": "2020-10-15 17:04:04", "modified": "2021-07-13 09:30:14", "commits": 2 } ], "_score": 3.778151250383644, "_indexed": false, "_nocasepkg": "a4classif", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/a4Classif", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.60.0", "date": "2026-05-29T08:45:20.000Z", "distro": "noble", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "629dc077c7c19a085ba386f51ed053858c788a7cd510eb920fdab85633467aeb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.6.0", "os": "linux", "version": "1.60.0", "date": "2026-05-29T08:45:57.000Z", "distro": "noble", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "a4e5339f0c60794674b269b5572aef48cacb84280b0f8b6e3617dbc0b21fe1bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.5.3", "os": "mac", "version": "1.60.0", "date": "2026-05-29T10:39:51.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "784c67080dc1c0849aa8a02dcffe2a94c7bddcc6547de04164ffe4bea3db60e1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.6.0", "os": "mac", "version": "1.60.0", "date": "2026-05-29T10:40:28.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "6578dc852d13d60948c36b1ab4bfc5dda8fc9dbd43f54a2c43b0bdf6d919d7b6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.6.0", "os": "wasm", "version": "1.60.0", "date": "2026-05-29T08:44:47.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "4e40260456f1db6421ef448fb53383d319233e015aee82f3caaffa05dc5e34d8", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.7.0", "os": "win", "version": "1.60.0", "date": "2026-05-29T08:50:15.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "5808a0b0d9fc94a87cea19b0987b130005fadae740870c877f9ed3dea28f0528", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.5.3", "os": "win", "version": "1.60.0", "date": "2026-05-29T08:49:10.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "0cdb1249b3aebdcc2a86b48c0251fb28d05f81e723671951d4ba9c99789f79bc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" }, { "r": "4.6.0", "os": "win", "version": "1.60.0", "date": "2026-05-29T08:49:12.000Z", "commit": "05b1d197dacf4c319b75cad7bbbf72287a2a4b60", "fileid": "e3668f5e8e0a3b28a74a0996bcaf92a9798c6b1260489cfd2d9234943a55bb1a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26627252256" } ] }