{
  "_id": "6a194208acfb0bcc41dd770d",
  "Package": "affyILM",
  "Type": "Package",
  "Title": "Linear Model of background subtraction and the Langmuir isotherm",
  "Version": "1.64.0",
  "Date": "2010-03-17",
  "Author": "K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon",
  "Maintainer": "Myriam Kroll and Fabrice Berger <fabrice.berger@gmail.com>",
  "Description": "affyILM is a preprocessing tool which estimates gene\nexpression levels for Affymetrix Gene Chips. Input from\nphysical chemistry is employed to first background subtract\nintensities before calculating concentrations on behalf of the\nLangmuir model.",
  "biocViews": "Microarray, OneChannel, Preprocessing",
  "License": "GPL-3",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:34:41 UTC",
  "RemoteUrl": "https://github.com/bioc/affyILM",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 06:40:22 UTC",
    "User": "root"
  },
  "MD5sum": "49471f1425b9b94f064f728b43ef52e9",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "affyILM_1.64.0.tar.gz",
  "_fileid": "9a4c097021461b308a07f8f286bf50b7d920f26d86fe4d6c558a64308abe91c0",
  "_filesize": 229230,
  "_sha256": "9a4c097021461b308a07f8f286bf50b7d920f26d86fe4d6c558a64308abe91c0",
  "_created": "2026-05-29T06:40:22.000Z",
  "_published": "2026-05-29T07:36:40.077Z",
  "_jobs": [
    {
      "job": 78451192223,
      "time": 170,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284712666"
    },
    {
      "job": 78451192205,
      "time": 250,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284730840"
    },
    {
      "job": 78451192231,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284715773"
    },
    {
      "job": 78451192215,
      "time": 131,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7285501992"
    },
    {
      "job": 78451192214,
      "time": 230,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285531620"
    },
    {
      "job": 78450712512,
      "time": 243,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284672591"
    },
    {
      "job": 78451192218,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284697929"
    },
    {
      "job": 78451192207,
      "time": 470,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284783444"
    },
    {
      "job": 78451192206,
      "time": 423,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7284773004"
    },
    {
      "job": 78451192222,
      "time": 474,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284784503"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 16
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/affyILM",
  "_commit": {
    "id": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379681
  },
  "_maintainer": {
    "name": "Myriam Kroll and Fabrice Berger",
    "email": "fabrice.berger@gmail.com"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "gcrma",
      "role": "Depends"
    },
    {
      "package": "affxparser",
      "version": ">= 1.16.0",
      "role": "Imports"
    },
    {
      "package": "affy",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "AffymetrixDataTestFiles",
      "role": "Suggests"
    },
    {
      "package": "hgfocusprobe",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.65.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.64.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "onechannel",
    "preprocessing"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 493,
    "source": "https://www.bioconductor.org/packages/stats/bioc/affyILM"
  },
  "_mentions": 2,
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/affyILM.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getExprSummary",
    "getIntens",
    "getProbeConcs",
    "getSDSummary",
    "ilm",
    "plotILM",
    "plotIntens"
  ],
  "_help": [
    {
      "page": "ilm",
      "title": "affyILM",
      "topics": [
        "ilm"
      ]
    },
    {
      "page": "ILM-class",
      "title": "Class to contain the results of an ilm calculation",
      "topics": [
        "ILM",
        "ILM-class"
      ]
    },
    {
      "page": "ilm-methods",
      "title": "Methods to access the results of ilm.",
      "topics": [
        "getExprSummary",
        "getExprSummary,ILM,character-method",
        "getExprSummary,ILM,missing-method",
        "getExprSummary,ILM-method",
        "getExprSummary-methods",
        "getIntens",
        "getIntens,ILM,character-method",
        "getIntens,ILM,missing-method",
        "getIntens,ILM-method",
        "getIntens-methods",
        "getProbeConcs",
        "getProbeConcs,ILM,character-method",
        "getProbeConcs,ILM,missing-method",
        "getProbeConcs,ILM-method",
        "getProbeConcs-methods",
        "getSDSummary",
        "getSDSummary,ILM,character-method",
        "getSDSummary,ILM,missing-method",
        "getSDSummary,ILM-method",
        "getSDSummary-methods",
        "show",
        "show,ILM-method",
        "[,ILM-method"
      ]
    },
    {
      "page": "plotILM",
      "title": "plotILM",
      "topics": [
        "plotILM",
        "plotILM,ILM,character-method",
        "plotILM,ILM,missing-method",
        "plotILM,ILM-method"
      ]
    },
    {
      "page": "plotIntens",
      "title": "plotIntens",
      "topics": [
        "plotIntens",
        "plotIntens,ILM,character-method",
        "plotIntens,ILM,missing-method",
        "plotIntens,ILM-method"
      ]
    }
  ],
  "_rundeps": [
    "affxparser",
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "Biostrings",
    "crayon",
    "gcrma",
    "generics",
    "IRanges",
    "preprocessCore",
    "S4Vectors",
    "Seqinfo",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "affyILM.Rnw",
      "filename": "affyILM.pdf",
      "title": "affyILM1.3.0",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:13:32",
      "modified": "2013-11-01 20:13:32",
      "commits": 1
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": false,
  "_nocasepkg": "affyilm",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/affyILM",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.64.0",
      "date": "2026-05-29T06:43:39.000Z",
      "distro": "noble",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "5580865623690f3803aed16da7fbffa6eee1c0bb50be33a4429b4c7ab0e0e45b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.64.0",
      "date": "2026-05-29T06:42:45.000Z",
      "distro": "noble",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "6cb7d88ee7dea8acef2f4ca2a0ea375efd19d721c180f9b85fc2c41bb31ea352",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.64.0",
      "date": "2026-05-29T07:33:41.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "a1641e780ccce7d02fda2c79635467c74ddbed88ee5c55fae2832fbb78a844ee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.64.0",
      "date": "2026-05-29T07:34:44.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "8c018816b631baf44422fd1ce362d21e72553e88abe98305583bb60c85cc27b8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.64.0",
      "date": "2026-05-29T06:42:31.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "07a4219743cd1963022ade2c36e49febc3de86ca9b893486096494a7171effb0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.64.0",
      "date": "2026-05-29T06:47:10.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "c1ee71690b9ca2b754ded6e35e7a1b4b629663b9312a3f10438c585097aa391f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.64.0",
      "date": "2026-05-29T06:46:34.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "36773814e0cc23058fe8a3571c46a2555ac4ceee83912fdbb8138c54e263e966",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.64.0",
      "date": "2026-05-29T06:47:18.000Z",
      "commit": "173b7125ec58a369fbf776d5d82d3d885b8ebf0b",
      "fileid": "949dc21d1635d11ce874cb687b7e6a127adb4aa29866a1344cd7b9d2b26c4dbd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622243167"
    }
  ]
}