{ "_id": "6a27ab2224555f66ed5343cc", "Package": "affyio", "Version": "1.82.0", "Title": "Tools for parsing Affymetrix data files", "Author": "Ben Bolstad ", "Maintainer": "Ben Bolstad ", "Description": "Routines for parsing Affymetrix data files based upon file\nformat information. Primary focus is on accessing the CEL and\nCDF file formats.", "License": "LGPL (>= 2)", "URL": "https://github.com/bmbolstad/affyio", "biocViews": "Microarray, DataImport, Infrastructure", "LazyLoad": "yes", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:30:01 UTC", "RemoteUrl": "https://github.com/bioc/affyio", "RemoteRef": "RELEASE_3_23", "RemoteSha": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-08 07:04:16 UTC", "User": "root" }, "MD5sum": "b8d4c9e90af2b08938811bb2ffe3367e", "_user": "bioc-release", "_type": "src", "_file": "affyio_1.82.0.tar.gz", "_fileid": "7a05888c1f8051553d852d284c385308214938eb302e4db02c3529d6135400ee", "_filesize": 206278, "_sha256": "7a05888c1f8051553d852d284c385308214938eb302e4db02c3529d6135400ee", "_created": "2026-06-08T07:04:16.000Z", "_published": "2026-06-09T05:56:50.854Z", "_jobs": [ { "job": 80256642668, "time": 127, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7499505301" }, { "job": 80256642997, "time": 126, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7473563650" }, { "job": 80256643282, "time": 188, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7473578830" }, { "job": 80256643279, "time": 111, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7473560241" }, { "job": 80256643246, "time": 159, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7473571878" }, { "job": 80256643185, "time": 120, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7473590557" }, { "job": 80256642800, "time": 216, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7499590168" }, { "job": 80256643040, "time": 95, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7473585022" }, { "job": 80256642780, "time": 149, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7499602010" }, { "job": 80256642726, "time": 201, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7473530230" }, { "job": 80256643086, "time": 95, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7473555211" }, { "job": 80256643000, "time": 123, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7473562215" }, { "job": 80256643087, "time": 76, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7473549924" }, { "job": 80256643251, "time": 77, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7473550162" } ], "_bioccheck": { "error": 3, "warning": 0, "note": 9 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/affyio", "_commit": { "id": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379401 }, "_maintainer": { "name": "Ben Bolstad", "email": "bmb@bmbolstad.com", "login": "bmbolstad", "description": "", "uuid": 5719304 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.6.0", "role": "Depends" }, { "package": "methods", "role": "Imports" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 119, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.83.0", "bioc": "3.24" }, { "branch": "release", "version": "1.82.0", "bioc": "3.23" } ], "_topics": [ "microarray", "dataimport", "infrastructure", "zlib" ], "_stars": 4, "_contributors": [ { "user": "bmbolstad", "count": 47, "uuid": 5719304 }, { "user": "dtenenba", "count": 22, "uuid": 2286826 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 12, "uuid": 1744257 }, { "user": "hpages", "count": 3, "uuid": 8810451 }, { "user": "dtrudg", "count": 2, "uuid": 4522799 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "jmacdon", "count": 1, "uuid": 5940924 }, { "user": "sanchit-saini", "count": 1, "uuid": 49326387 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 12990, "source": "https://www.bioconductor.org/packages/stats/bioc/affyio" }, "_mentions": 5, "_devurl": "https://github.com/bmbolstad/affyio", "_searchresults": 51, "_rbuild": "4.6.0", "_assets": [ "extra/affyio.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_homeurl": "https://github.com/bmbolstad/affyio", "_realowner": "bioc", "_cranurl": false, "_exports": [ "check.cdf.type", "get.celfile.dates", "read_abatch", "read_abatch_stddev", "Read.CC.Generic", "read.cdffile.list", "read.celfile", "read.celfile.header", "read.celfile.probeintensity.matrices", "Read.CYCHP" ], "_help": [ { "page": "check.cdf.type", "title": "CDF file format function", "topics": [ "check.cdf.type" ] }, { "page": "get.celfile.dates", "title": "Extract Dates from CEL files", "topics": [ "get.celfile.dates" ] }, { "page": "read.cdffile.list", "title": "Read CDF file into an R list", "topics": [ "read.cdffile.list" ] }, { "page": "read.celfile", "title": "Read a CEL file into an R list", "topics": [ "read.celfile" ] }, { "page": "read.celfile.header", "title": "Read header information from cel file", "topics": [ "read.celfile.header" ] }, { "page": "read.celfile.probeintensity.matrices", "title": "Read PM or MM from CEL file into matrices", "topics": [ "read.celfile.probeintensity.matrices" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg-3.1ubuntu2.1", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" } ], "_score": 8.878997521603065, "_indexed": false, "_nocasepkg": "affyio", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/affyio", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.82.0", "date": "2026-06-08T07:07:11.000Z", "distro": "noble", "arch": "aarch64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "5f4a50aa1218b00ee3fe69a7b1c8c956837a077312c2529f851a74b12d201626", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.7.0", "os": "linux", "version": "1.82.0", "date": "2026-06-08T07:08:08.000Z", "distro": "noble", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "105065765ad87b94d82125c36cf8763d209ff6a03aa4f3978ebcc7a3619cab0a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "linux", "version": "1.82.0", "date": "2026-06-08T07:06:58.000Z", "distro": "noble", "arch": "aarch64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "4df93d5a803fe92f518f834e8c23327b3a7012286973ede9e49131906739b32e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "linux", "version": "1.82.0", "date": "2026-06-08T07:07:41.000Z", "distro": "noble", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "385707d81450ce376e7317da454ccf387ee0b03886a0e94f41809ad8941202c6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.5.3", "os": "mac", "version": "1.82.0", "date": "2026-06-08T07:08:48.000Z", "arch": "aarch64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "8c51af87ee56e5668fc358d157e0afcd1ccd1d1a815a86c5585d8976e45ad35b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.5.3", "os": "mac", "version": "1.82.0", "date": "2026-06-09T05:55:10.000Z", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "b6ddf3dd6f42054e096e9259d0b770e56d55f98dc03b8cd57cbb02e1299411dc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "mac", "version": "1.82.0", "date": "2026-06-08T07:08:31.000Z", "arch": "aarch64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "9f01bb992a8c66a8a6cdf970bda5f9d6d4b419c5b11512a42d573f1a36c69f48", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "mac", "version": "1.82.0", "date": "2026-06-09T05:56:11.000Z", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "3d8810a36db236f77e31c602406a900028df086b1cae753131cdc80a18e2a2b0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "wasm", "version": "1.82.0", "date": "2026-06-08T07:06:48.000Z", "arch": "emscripten", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "ff6fceb97868513c52410537826245d62dd3cc7680797d9ade79b20066fb91c2", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.7.0", "os": "win", "version": "1.82.0", "date": "2026-06-08T07:06:28.000Z", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "2ced8752bf63508394ca139341479f3a3487bf67c6817d179eb69243bbf89447", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.5.3", "os": "win", "version": "1.82.0", "date": "2026-06-08T07:06:02.000Z", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "5dcf637820b37f2016bfe94a9f46d549859bc9f78286110d1ad534141930fcf7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" }, { "r": "4.6.0", "os": "win", "version": "1.82.0", "date": "2026-06-08T07:06:02.000Z", "arch": "x86_64", "commit": "5c67e5d7ef5206fb5a86c53c23d7a0fd9c3022f9", "fileid": "09766eede2c3787f5c81579e48287bdd829c17e59d6cb8d0cbe4f6d2c8f29b86", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27121335366" } ] }