{
  "_id": "6a1fe0e6b401979e7343985a",
  "Package": "alabaster.se",
  "Title": "Load and Save SummarizedExperiments from File",
  "Version": "1.12.0",
  "Date": "2024-10-16",
  "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\"), email=\"infinite.monkeys.with.keyboards@gmail.com\")",
  "License": "MIT + file LICENSE",
  "Description": "Save SummarizedExperiments into file artifacts, and load\nthem back into memory. This is a more portable alternative to\nserialization of such objects into RDS files. Each artifact is\nassociated with metadata for further interpretation; downstream\napplications can enrich this metadata with context-specific\nproperties.",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.1",
  "biocViews": "DataImport, DataRepresentation",
  "Config/pak/sysreqs": "libssl-dev libnode-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 13:00:05 UTC",
  "RemoteUrl": "https://github.com/bioc/alabaster.se",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "4fe9760c6c9db82d1511712b314b80715f73f79f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 08:01:42 UTC",
    "User": "root"
  },
  "Author": "Aaron Lun [aut, cre]",
  "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
  "MD5sum": "ce4e3beece20e73bb90b88f1e117549d",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "alabaster.se_1.12.0.tar.gz",
  "_fileid": "0bb5f512d24cc0f79ee550e2f3fdf62dc567962ed5028fe1e39aef6aa5b3cd9f",
  "_filesize": 109858,
  "_sha256": "0bb5f512d24cc0f79ee550e2f3fdf62dc567962ed5028fe1e39aef6aa5b3cd9f",
  "_created": "2026-06-03T08:01:42.000Z",
  "_published": "2026-06-03T08:08:06.709Z",
  "_jobs": [
    {
      "job": 79248700239,
      "time": 187,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7378988186"
    },
    {
      "job": 79248700310,
      "time": 329,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7379036848"
    },
    {
      "job": 79248700495,
      "time": 302,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7379027218"
    },
    {
      "job": 79248700531,
      "time": 152,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7378976934"
    },
    {
      "job": 79248700260,
      "time": 230,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7379002824"
    },
    {
      "job": 79248027881,
      "time": 244,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7378923953"
    },
    {
      "job": 79248700227,
      "time": 123,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7378966861"
    },
    {
      "job": 79248700359,
      "time": 221,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7378999902"
    },
    {
      "job": 79248700301,
      "time": 205,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7378994664"
    },
    {
      "job": 79248700269,
      "time": 214,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7378997661"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 7
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/alabaster.se",
  "_commit": {
    "id": "4fe9760c6c9db82d1511712b314b80715f73f79f",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777381205
  },
  "_maintainer": {
    "name": "Aaron Lun",
    "email": "infinite.monkeys.with.keyboards@gmail.com",
    "login": "ltla",
    "twitter": "@realAaronLun",
    "description": "(ノಠ益ಠ)ノ彡┻━┻\n",
    "uuid": 8166669
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "SummarizedExperiment",
      "role": "Depends"
    },
    {
      "package": "alabaster.base",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "alabaster.ranges",
      "role": "Imports"
    },
    {
      "package": "alabaster.matrix",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 10,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.13.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.12.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dataimport",
    "datarepresentation"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 5647,
    "source": "https://www.bioconductor.org/packages/stats/bioc/alabaster.se"
  },
  "_searchresults": 13,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/alabaster.se.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "emptyRowRanges",
    "loadSummarizedExperiment",
    "readRangedSummarizedExperiment",
    "readSummarizedExperiment",
    "saveObject",
    "stageObject"
  ],
  "_help": [
    {
      "page": "emptyRowRanges",
      "title": "Is the 'rowRanges' empty?",
      "topics": [
        "emptyRowRanges"
      ]
    },
    {
      "page": "readRangedSummarizedExperiment",
      "title": "Read a RangedSummarizedExperiment from disk",
      "topics": [
        "readRangedSummarizedExperiment"
      ]
    },
    {
      "page": "readSummarizedExperiment",
      "title": "Read a SummarizedExperiment from disk",
      "topics": [
        "loadSummarizedExperiment",
        "readSummarizedExperiment"
      ]
    },
    {
      "page": "saveRangedSummarizedExperiment",
      "title": "Save a RangedSummarizedExperiment to disk",
      "topics": [
        "saveObject,RangedSummarizedExperiment-method",
        "saveRangedSummarizedExperiment",
        "stageObject,RangedSummarizedExperiment-method"
      ]
    },
    {
      "page": "saveSummarizedExperiment",
      "title": "Save a SummarizedExperiment to disk",
      "topics": [
        "saveObject,SummarizedExperiment-method",
        "saveSummarizedExperiment",
        "stageObject,SummarizedExperiment-method"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/alabaster.se/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "alabaster.base",
    "alabaster.matrix",
    "alabaster.ranges",
    "alabaster.schemas",
    "assorthead",
    "Biobase",
    "BiocGenerics",
    "biocmake",
    "curl",
    "DelayedArray",
    "dir.expiry",
    "filelock",
    "generics",
    "GenomicRanges",
    "h5mread",
    "HDF5Array",
    "IRanges",
    "jsonlite",
    "jsonvalidate",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "R6",
    "Rcpp",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SparseArray",
    "SummarizedExperiment",
    "V8",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "userguide.Rmd",
      "filename": "userguide.html",
      "title": "Saving SummarizedExperiments to artifacts and back again",
      "author": "Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Quick start",
        "Session information"
      ],
      "created": "2022-09-21 15:43:12",
      "modified": "2024-07-05 08:29:49",
      "commits": 4
    }
  ],
  "_score": 6.342882394763379,
  "_indexed": false,
  "_nocasepkg": "alabaster.se",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/alabaster.se",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-06-03T08:05:07.000Z",
      "distro": "noble",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "4c7172b1f785cc9a0db8dc074c38fb26624b9811b80f74bcb3aae9676b4354c9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-06-03T08:04:36.000Z",
      "distro": "noble",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "b6ae1fe44769f2e392e7aa5b6a9eb223d0e5f4dbcb4a33b58896db369734dfed",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-06-03T08:03:23.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "a4bf0e4a64da998c4e3a2c13c436064349e40f3caf723953d58aadb6579f32b1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-06-03T08:03:55.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "14616cf45441376da56f9ebdd3417cc598e5733e280c5c2b57f2d50f11b04162",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.12.0",
      "date": "2026-06-03T08:04:17.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "8890a6b813e4bf4dec42d210e801428522618039d64d74efbea3b0686e64e2b0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-06-03T08:03:20.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "9857d4efca87f28d6c1310114d923c4795f95560f201a9ce4f7e6c0fbd76142d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-06-03T08:03:20.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "ca694bc462e38d77b0f6fe88929f9c5eda483ae7a867c2e67476755482d37b50",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-06-03T08:03:19.000Z",
      "commit": "4fe9760c6c9db82d1511712b314b80715f73f79f",
      "fileid": "e55f94e7b98b863993d58bc33f54d47096a1fee49fd05dc4481da7a262997703",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871579737"
    }
  ]
}