{ "_id": "6a196c56acfb0bcc41dea80d", "Package": "alabaster.spatial", "Title": "Save and Load Spatial 'Omics Data to/from File", "Description": "Save SpatialExperiment objects and their images into file\nartifacts, and load them back into memory. This is a more\nportable alternative to serialization of such objects into RDS\nfiles. Each artifact is associated with metadata for further\ninterpretation; downstream applications can enrich this\nmetadata with context-specific properties.", "Version": "1.12.0", "Date": "2026-02-01", "License": "MIT + file LICENSE", "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\"), email=\"infinite.monkeys.with.keyboards@gmail.com\")", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "biocViews": "DataImport, DataRepresentation", "Config/pak/sysreqs": "libmagick++-dev gsfonts libicu-dev libssl-dev\nlibnode-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 13:00:07 UTC", "RemoteUrl": "https://github.com/bioc/alabaster.spatial", "RemoteRef": "RELEASE_3_23", "RemoteSha": "c33527b91d65bb115b736cb9bae9220d02525a91", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 08:36:10 UTC", "User": "root" }, "Author": "Aaron Lun [aut, cre]", "Maintainer": "Aaron Lun ", "MD5sum": "04fd78927eed8c60ee84394d7b960cc7", "_user": "bioc-release", "_type": "src", "_file": "alabaster.spatial_1.12.0.tar.gz", "_fileid": "439f4ccd280c9c556988c476387c8d7ed447f1c067e21f7ddd3f3758960c2cc8", "_filesize": 540646, "_sha256": "439f4ccd280c9c556988c476387c8d7ed447f1c067e21f7ddd3f3758960c2cc8", "_created": "2026-05-29T08:36:10.000Z", "_published": "2026-05-29T10:37:10.109Z", "_jobs": [ { "job": 78466773270, "time": 205, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7286631682" }, { "job": 78466773244, "time": 357, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7286676927" }, { "job": 78466773262, "time": 384, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7286685068" }, { "job": 78466773346, "time": 185, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7288700906" }, { "job": 78466773221, "time": 246, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7288718708" }, { "job": 78466088423, "time": 281, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7286573021" }, { "job": 78466773242, "time": 161, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7286619261" }, { "job": 78466773265, "time": 272, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7286651267" }, { "job": 78466773375, "time": 288, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7286656354" }, { "job": 78466773291, "time": 288, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7286655990" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/alabaster.spatial", "_commit": { "id": "c33527b91d65bb115b736cb9bae9220d02525a91", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777381207 }, "_maintainer": { "name": "Aaron Lun", "email": "infinite.monkeys.with.keyboards@gmail.com", "login": "ltla", "twitter": "@realAaronLun", "description": "(ノಠ益ಠ)ノ彡┻━┻\n", "uuid": 8166669 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "SpatialExperiment", "role": "Depends" }, { "package": "alabaster.base", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "alabaster.sce", "role": "Imports" }, { "package": "rhdf5", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "DropletUtils", "role": "Suggests" }, { "package": "magick", "role": "Suggests" }, { "package": "png", "role": "Suggests" }, { "package": "digest", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-05", "n": 1 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.13.0", "bioc": "3.24" }, { "branch": "release", "version": "1.12.0", "bioc": "3.23" } ], "_topics": [ "dataimport", "datarepresentation" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 299, "source": "https://www.bioconductor.org/packages/stats/bioc/alabaster.spatial" }, "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/alabaster.spatial.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "loadSpatialExperiment", "loadSpatialImage", "readSpatialExperiment", "saveObject", "stageObject" ], "_help": [ { "page": "loadSpatialImage", "title": "Load a spatial image", "topics": [ "loadSpatialImage" ] }, { "page": "readSpatialExperiment", "title": "Read a SpatialExperiment from disk", "topics": [ "loadSpatialExperiment", "readSpatialExperiment" ] }, { "page": "saveSpatialExperiment", "title": "Save a spatial experiment", "topics": [ "saveObject,SpatialExperiment-method", "stageObject,SpatialExperiment-method" ] }, { "page": "stageSpatialImage", "title": "Stage images for upload", "topics": [ "stageObject,RemoteSpatialImage-method", "stageObject,StoredSpatialImage-method", "stageObject,VirtualSpatialImage-method", "stageSpatialImage" ] } ], "_readme": "https://github.com/bioc/alabaster.spatial/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "alabaster.base", "alabaster.matrix", "alabaster.ranges", "alabaster.sce", "alabaster.schemas", "alabaster.se", "askpass", "assorthead", "Biobase", "BiocFileCache", "BiocGenerics", "biocmake", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "curl", "DBI", "dbplyr", "DelayedArray", "dir.expiry", "dplyr", "fastmap", "filelock", "generics", "GenomicRanges", "glue", "h5mread", "HDF5Array", "httr2", "IRanges", "jsonlite", "jsonvalidate", "lattice", "lifecycle", "magick", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "openssl", "pillar", "pkgconfig", "purrr", "R6", "rappdirs", "Rcpp", "rhdf5", "rhdf5filters", "Rhdf5lib", "rjson", "rlang", "RSQLite", "S4Arrays", "S4Vectors", "Seqinfo", "SingleCellExperiment", "SparseArray", "SpatialExperiment", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "utf8", "V8", "vctrs", "withr", "XVector" ], "_vignettes": [ { "source": "userguide.Rmd", "filename": "userguide.html", "title": "Save/load spatial omics data to/from file", "author": "Aaron Lun", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Quick start", "Session info" ], "created": "2022-09-21 21:43:05", "modified": "2024-10-16 18:05:46", "commits": 3 } ], "_score": 4.995635194597551, "_indexed": false, "_nocasepkg": "alabaster.spatial", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/alabaster.spatial", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.12.0", "date": "2026-05-29T08:39:48.000Z", "distro": "noble", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "245923a948ab3f90544cbe923ddfa7fb8c49338ac6817875029cb0f59c0798d7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.6.0", "os": "linux", "version": "1.12.0", "date": "2026-05-29T08:40:11.000Z", "distro": "noble", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "2aca8e2b3094a7086c9505b35e7635378e38c3210711da8cd33f15ae02cc076a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.5.3", "os": "mac", "version": "1.12.0", "date": "2026-05-29T10:33:52.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "db0b1510de7a0fb331cf26bcac518307d8094e3cbf3fcdf55049594900eca8e9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.6.0", "os": "mac", "version": "1.12.0", "date": "2026-05-29T10:34:24.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "d5072b13cc1bfaad218972aa3f539e3aba9dbd4244f1e20f8d069ac2b24bab3d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.6.0", "os": "wasm", "version": "1.12.0", "date": "2026-05-29T08:39:25.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "8b700156aa7c30c3bf97e92ef204800570d40452b1761c84024c426a132bd60a", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.7.0", "os": "win", "version": "1.12.0", "date": "2026-05-29T08:38:30.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "52e0dc9295c5527fec73cd4ba5e9736f670cef67613b9ac5fdb1361715afec31", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.5.3", "os": "win", "version": "1.12.0", "date": "2026-05-29T08:38:48.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "6afb3b39594f24f2fc1f66254f4dbcb18d75e795d11fd56134c2b3a8474b64b6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" }, { "r": "4.6.0", "os": "win", "version": "1.12.0", "date": "2026-05-29T08:38:25.000Z", "commit": "c33527b91d65bb115b736cb9bae9220d02525a91", "fileid": "cb7040d8e671ddc6cefa260b1c625531991b30167aee3b158374b65cac381a41", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626983378" } ] }