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  "Title": "Light-Weight Methods for Normalization and Visualization of\nMicroarray Data using Only Basic R Data Types",
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  "Description": "Methods for microarray analysis that take basic data types\nsuch as matrices and lists of vectors.  These methods can be\nused standalone, be utilized in other packages, or be wrapped\nup in higher-level classes.",
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  "biocViews": "Infrastructure, Microarray, OneChannel, TwoChannel,\nMultiChannel, Visualization, Preprocessing",
  "URL": "https://github.com/HenrikBengtsson/aroma.light,\nhttps://www.aroma-project.org",
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  "Date/Publication": "2026-04-28 12:31:51 UTC",
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  "Author": "Henrik Bengtsson [aut, cre, cph],\nPierre Neuvial [ctb],\nAaron Lun [ctb]",
  "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
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    "findPeaksAndValleys.density",
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    "fitIWPCA",
    "fitIWPCA.matrix",
    "fitNaiveGenotypes",
    "fitNaiveGenotypes.numeric",
    "fitPrincipalCurve",
    "fitPrincipalCurve.matrix",
    "fitXYCurve",
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    "normalizeRobustSpline",
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    "robustSmoothSpline",
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    "rowAverages",
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    "sampleCorrelations.matrix",
    "sampleTuples",
    "sampleTuples.default",
    "scalarProduct",
    "tr",
    "wpca",
    "wpca.matrix"
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      "title": "Package aroma.light",
      "topics": [
        "aroma.light-package",
        "aroma.light"
      ]
    },
    {
      "page": "1._Calibration_and_Normalization",
      "title": "1. Calibration and Normalization",
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        "1. Calibration and Normalization"
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        "backtransformPrincipalCurve.numeric"
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        "calibrateMultiscan.matrix"
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        "callNaiveGenotypes.numeric"
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    },
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    },
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    },
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        "fitPrincipalCurve.matrix"
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    },
    {
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      "topics": [
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        "backtransformXYCurve.matrix",
        "fitXYCurve",
        "fitXYCurve.matrix"
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    },
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      "topics": [
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        "plotDensity.list",
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    },
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      "page": "plotMvsAPairs",
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