{ "_id": "6abbb3c499f7aa8c6aa485ee", "Package": "atSNP", "Type": "Package", "Title": "Affinity test for identifying regulatory SNPs", "Version": "1.28.0", "Date": "2021-4-26", "Authors@R": "c(person(given = \"Chandler\", family = \"Zuo\", role = \"aut\"),\nperson(given = \"Sunyoung\",family = \"Shin\",role = c(\"aut\", \"cre\"), email = \"sunyoung.shin@utdallas.edu\"),\nperson(given = \"Sunduz\", family = \"Keles\", role = \"aut\"))", "Description": "atSNP performs affinity tests of motif matches with the\nSNP or the reference genomes and SNP-led changes in motif\nmatches.", "License": "GPL-2", "RoxygenNote": "6.1.1", "biocViews": "Software, ChIPSeq, GenomeAnnotation, MotifAnnotation,\nVisualization", "URL": "https://github.com/sunyoungshin/atSNP", "BugReports": "https://github.com/sunyoungshin/atSNP/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libgsl0-dev libbz2-dev libicu-dev\nliblzma-dev libuv1-dev libxml2-dev libssl-dev xz-utils\nzlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:49:34 UTC", "RemoteUrl": "https://github.com/bioc/atSNP", "RemoteRef": "RELEASE_3_23", "RemoteSha": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-09-29 11:31:54 UTC", "User": "root" }, "Author": "Chandler Zuo [aut],\nSunyoung Shin [aut, cre],\nSunduz Keles [aut]", "Maintainer": "Sunyoung Shin ", "_user": "bioc-release", "_type": "src", "_file": "atSNP_1.28.0.tar.gz", "_fileid": "https://r2.ropensci.org/6476437c04915ff2e52b73b31a220740f7712056192cd953da11893d82ba8335", "_filesize": 918280, "_sha256": "6476437c04915ff2e52b73b31a220740f7712056192cd953da11893d82ba8335", "_expires": "2027-01-07T12:49:06.000Z", "_created": "2026-09-29T11:31:54.000Z", "_published": "2026-09-29T12:49:08.380Z", "_bioccheck": { "error": 0, "warning": 1, "note": 16 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183", "_status": "success", "_upstream": "https://github.com/bioc/atSNP", "_commit": { "id": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380574 }, "_maintainer": { "name": "Sunyoung Shin", "email": "sunyoung.shin@utdallas.edu" }, "_distro": "resolute", "_jobs": [ { "job": 109386168022, "time": 226, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11029823914" }, { "job": 109386168177, "time": 366, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11029769377" }, { "job": 109386168034, "time": 541, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11030364175" }, { "job": 109386168106, "time": 370, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11030402943" }, { "job": 109386168061, "time": 802, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11031420228" }, { "job": 109386168105, "time": 374, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11034140830" }, { "job": 109386168086, "time": 756, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11034026947" }, { "job": 109386167987, "time": 344, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11033691432" }, { "job": 109386168093, "time": 489, "config": "macos-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11034116124" }, { "job": 109384476850, "time": 296, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11030402034" }, { "job": 109386167995, "time": 202, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11029714577" }, { "job": 109386168085, "time": 551, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11030418192" }, { "job": 109386168127, "time": 494, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11030896930" }, { "job": 109386168121, "time": 483, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11029824731" }, { "job": 109386168214, "time": 520, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11030458231" }, { "job": 109386168155, "time": 477, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11030373324" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "BSgenome", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "motifStack", "role": "Imports" }, { "package": "rappdirs", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "testthat", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.29.0", "bioc": "3.24" }, { "branch": "release", "version": "1.28.0", "bioc": "3.23" } ], "_topics": [ "software", "chipseq", "genomeannotation", "motifannotation", "visualization", "cpp" ], "_stars": 2, "_contributors": [ { "user": "sunyoungshin", "count": 86, "uuid": 10079773 }, { "user": "chandlerzuo", "count": 34, "uuid": 6797874 }, { "user": "nturaga", "count": 8, "uuid": 2746443 }, { "user": "pjvolders", "count": 1, "uuid": 2227853 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 470, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 464, "source": "https://www.bioconductor.org/packages/stats/bioc/atSNP" }, "_mentions": 5, "_devurl": "https://github.com/sunyoungshin/atsnp", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/atSNP.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/sunyoungshin/atsnp", "_realowner": "bioc", "_cranurl": false, "_exports": [ "ComputeMotifScore", "ComputePValues", "dtMotifMatch", "GetIUPACSequence", "LoadFastaData", "LoadMotifLibrary", "LoadSNPData", "MatchSubsequence", "plotMotifMatch" ], "_datasets": [ { "name": "encode_motif", "title": "A motif library containing 2065 motifs downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.", "object": "encode_library", "file": "encode_library.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "encode_motifinfo", "title": "The information for the motif library downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.", "object": "encode_library", "file": "encode_library.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "jaspar_motif", "title": "A motif library containing 593 motifs downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.", "object": "jaspar_library", "file": "jaspar_library.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "jaspar_motifinfo", "title": "The information for the motif library downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.", "object": "jaspar_library", "file": "jaspar_library.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "motif_library", "title": "A sample motif library.", "object": "example", "file": "example.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "motif_match", "title": "Composit logo plotting input containing motif scores, the matching subsequences and the augmented matching subsequences on SNP and reference allele", "object": "example", "file": "example.rda", "class": [ "data.frame" ], "fields": [ "snpid", "motif", "ref_seq", "snp_seq", "motif_len", "ref_start", "ref_end", "ref_strand", "snp_start", "snp_end", "snp_strand", "log_lik_ref", "log_lik_snp", "log_lik_ratio", "log_enhance_odds", "log_reduce_odds", "IUPAC", "ref_match_seq", "snp_match_seq", "ref_seq_snp_match", "snp_seq_ref_match", "snpbase", "snp_ref_start", "snp_ref_end", "snp_ref_length", "ref_aug_match_seq_forward", "ref_aug_match_seq_reverse", "snp_aug_match_seq_forward", "snp_aug_match_seq_reverse", "ref_location", "snp_location", "ref_extra_pwm_left", "ref_extra_pwm_right", "snp_extra_pwm_left", "snp_extra_pwm_right" ], "rows": 1, "table": true, "tojson": true }, { "name": "motif_scores", "title": "Scores for the sample snp data computed based on the motif data.", "object": "example", "file": "example.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "prior", "title": "Default stationary distribution for nucleotide sequences in the reference genome.", "object": "default_par", "file": "default_par.rda", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "snp_tbl", "title": "A data frame for SNP information.", "object": "example", "file": "example.rda", "class": [ "data.frame" ], "fields": [ "snpid", "a1", "a2", "chr", "snp" ], "rows": 2, "table": true, "tojson": true }, { "name": "snpInfo", "title": "A data set for SNP information.", "object": "example", "file": "example.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "transition", "title": "Default transition probability matrix for nucleotide sequences in the reference genome.", "object": "default_par", "file": "default_par.rda", "class": [ "matrix", "array" ], "fields": [ "A", "C", "G", "T" ], "rows": 4, "table": true, "tojson": true } ], "_help": [ { "page": "atSNP-package", "title": "atSNP: affinity tests for regulatory SNP detection", "topics": [ "atSNP-package" ] }, { "page": "ComputeMotifScore", "title": "Compute the scores for SNP effects on motifs.", "topics": [ "ComputeMotifScore" ] }, { "page": "ComputePValues", "title": "Compute p-values for affinity scores.", "topics": [ "ComputePValues" ] }, { "page": "dtMotifMatch", "title": "Compute the augmented matching subsequence on SNP and reference allele s.", "topics": [ "dtMotifMatch" ] }, { "page": "encode_motif", "title": "A motif library containing 2065 motifs downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.", "topics": [ "encode_motif" ] }, { "page": "encode_motifinfo", "title": "The information for the motif library downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.", "topics": [ "encode_motifinfo" ] }, { "page": "GetIUPACSequence", "title": "Get the IUPAC sequence of a motif.", "topics": [ "GetIUPACSequence" ] }, { "page": "jaspar_motif", "title": "A motif library containing 593 motifs downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.", "topics": [ "jaspar_motif" ] }, { "page": "jaspar_motifinfo", "title": "The information for the motif library downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.", "topics": [ "jaspar_motifinfo" ] }, { "page": "LoadFastaData", "title": "Load the SNP data from fasta files.", "topics": [ "LoadFastaData" ] }, { "page": "LoadMotifLibrary", "title": "Load position weight matrices.", "topics": [ "LoadMotifLibrary" ] }, { "page": "LoadSNPData", "title": "Load the SNP information and code the genome sequences around the SNP locations.", "topics": [ "LoadSNPData" ] }, { "page": "MatchSubsequence", "title": "Compute the matching subsequence.", "topics": [ "MatchSubsequence" ] }, { "page": "motif_library", "title": "A sample motif library.", "topics": [ "motif_library" ] }, { "page": "motif_match", "title": "Composit logo plotting input containing motif scores, the matching subsequences and the augmented matching subsequences on SNP and reference allele", "topics": [ "motif_match" ] }, { "page": "motif_scores", "title": "Scores for the sample snp data computed based on the motif data.", "topics": [ "motif_scores" ] }, { "page": "plotMotifMatch", "title": "Plot sequence logos of the position weight matrix of the motif and sequences of its corresponding best matching augmented subsequence on the reference and SNP allele.", "topics": [ "plotMotifMatch" ] }, { "page": "prior", "title": "Default stationary distribution for nucleotide sequences in the reference genome.", "topics": [ "prior" ] }, { "page": "snp_tbl", "title": "A data frame for SNP information.", "topics": [ "snp_tbl" ] }, { "page": "snpInfo", "title": "A data set for SNP information.", "topics": [ "snpInfo" ] }, { "page": "transition", "title": "Default transition probability matrix for nucleotide sequences in the reference genome.", "topics": [ "transition" ] } ], "_readme": "https://github.com/bioc/atSNP/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "ade4", "askpass", "base64enc", "BH", "Biobase", "BiocFileCache", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bit", "bit64", "bitops", "blob", "brio", "BSgenome", "bslib", "cachem", "callr", "caTools", "cigarillo", "cli", "codetools", "cpp11", "crayon", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "desc", "diffobj", "digest", "DirichletMultinomial", "dplyr", "evaluate", "farver", "fastmap", "filelock", "fontawesome", "formatR", "fs", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicRanges", "ggplot2", "glue", "gtable", "gtools", "highr", "htmltools", "htmlwidgets", "httr", "httr2", "IRanges", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lambda.r", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "motifStack", "openssl", "otel", "pillar", "pixmap", "pkgbuild", "pkgconfig", "pkgload", "praise", "processx", "ps", "purrr", "pwalign", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RCurl", "restfulr", "Rhtslib", "rjson", "rlang", "rmarkdown", "rprojroot", "Rsamtools", "RSQLite", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "seqLogo", "snow", "sp", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "sys", "testthat", "TFBSTools", "TFMPvalue", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "waldo", "withr", "xfun", "XML", "XVector", "yaml" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "atsnp-vignette.rmd", "filename": "atsnp-vignette.html", "title": "atSNP: affinity tests for regulatory SNP detection", "author": "Chandler Zuo, Sunyoung Shin, Sunduz Keles", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Example", "Load the motif library", "ENCODE derived motif library", "JASPAR database motif library", "User defined motif library", "Load the SNP Data", "Load SNP data through a table", "Load SNP data through dbSNP's rsids", "Load SNP data through a pair of fasta files", "Affinity score tests", "Load the example data", "Compute affinity scores", "Compute p-values", "Multiple testing adjustment", "Additional analysis", "Session Information" ], "created": "2018-12-29 09:27:24", "modified": "2021-04-26 23:15:40", "commits": 19 } ], "_score": 5.477121254719663, "_indexed": false, "_nocasepkg": "atsnp", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/atSNP", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.28.0", "date": "2026-09-29T11:35:11.000Z", "distro": "resolute", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/07732b8b412dd5da069dadc73f1852cdd87ff308d8c77bd92ff9ac0103e2cd7e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.7.0", "os": "linux", "version": "1.28.0", "date": "2026-09-29T11:37:23.000Z", "distro": "resolute", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/0ccf6f1d57718f9cd399073a9e1db937beb8c980c8395b3bc0b6ce014f360d93", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "linux", "version": "1.28.0", "date": "2026-09-29T11:35:17.000Z", "distro": "resolute", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/7021368374ee775ccc1f7702624e42ad02698099911f52838432b86c700672a5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "linux", "version": "1.28.0", "date": "2026-09-29T11:42:08.000Z", "distro": "resolute", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/90794bccdae5f775d0b00643cb41247d648a0ced6f435f7a270d64dd8966a165", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.5.3", "os": "mac", "version": "1.28.0", "date": "2026-09-29T12:39:19.000Z", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/0adb647b13cd7a26c575748279af43b0d4a7f34b907adbf5d5b92dde67086d5c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.5.3", "os": "mac", "version": "1.28.0", "date": "2026-09-29T12:39:38.000Z", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/1bd4873479b5ddb98ffd24f68cf5b138e30610aeb2f7553b4343fa3fd5da5535", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "mac", "version": "1.28.0", "date": "2026-09-29T12:37:40.000Z", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/9c0a64273b355c25b0dd042ad64e2711c4fcd5187d29f4f70cd39ef72ad5029d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "mac", "version": "1.28.0", "date": "2026-09-29T12:40:12.000Z", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/dc7cd9a3cecdebce84b2aa1c7bc99f3d1ad763c1d7f87939d00b1d6b114fb67b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.0", "os": "wasm", "version": "1.28.0", "date": "2026-09-29T11:35:50.000Z", "arch": "emscripten", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/362bc5a6e44a7febe0f726517a1d673dfedd90ba49a41b3874df87822cdd7300", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.7.0", "os": "win", "version": "1.28.0", "date": "2026-09-29T11:36:10.000Z", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/28d39c2418d2d1ff9101958135a260501201f6e5125e616fd518a89cc1253599", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.7.0", "os": "win", "version": "1.28.0", "date": "2026-09-29T11:33:54.000Z", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/7e76d3c8e881d2cc40bc6a6a312f3fa497d6dd46ff3cad6aaf2322277954ea2b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.5.3", "os": "win", "version": "1.28.0", "date": "2026-09-29T11:34:59.000Z", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/4654a1e09270bc8c727b5afe56f91992fa99dcd2ab49ceb0504a452e38dfae70", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "win", "version": "1.28.0", "date": "2026-09-29T11:35:52.000Z", "arch": "aarch64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/27790fae41ef4d63f2f28f33e97938da8ebcd7ac6f5d3528714dc5ac03ef18d5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" }, { "r": "4.6.1", "os": "win", "version": "1.28.0", "date": "2026-09-29T11:34:07.000Z", "arch": "x86_64", "commit": "3cbbeaf15edb3d998f09e9817e01aebd1a65dd06", "fileid": "https://r2.ropensci.org/541c019102b706a84c69f36b47d7db0a3805b56564517889b9f2ce713b5c8573", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36561829183" } ] }