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  "Title": "Fast Sequence Mapping in High-Throughput shRNA and CRISPR\nScreens",
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  "Date": "2019-07-18",
  "Authors@R": "c(person(\"Jiaxing\",\"Lin\", role = c(\"aut\", \"cre\"), \nemail = \"jiaxing.lin@duke.edu\"),\nperson(\"Jeremy\", \"Gresham\", role = \"aut\"),\nperson(\"Jichun\", \"Xie\", role = \"aut\"),\nperson(\"Kouros\", \"Owzar\", role = \"aut\"),\nperson(\"Tongrong\", \"Wang\", role = \"ctb\"),\nperson(\"So Young\", \"Kim\", role = \"ctb\"),\nperson(\"James\", \"Alvarez\", role = \"ctb\"),\nperson(\"Jeffrey S.\", \"Damrauer\", role = \"ctb\"),\nperson(\"Scott\", \"Floyd\", role = \"ctb\"),\nperson(\"Joshua\", \"Granek\", role = \"ctb\"),\nperson(\"Andrew\", \"Allen\", role = \"ctb\"),\nperson(\"Cliburn\", \"Chan\", role = \"ctb\"))",
  "Author": "Jiaxing Lin [aut, cre], Jeremy Gresham [aut], Jichun Xie [aut],\nKouros Owzar [aut], Tongrong Wang [ctb], So Young Kim [ctb],\nJames Alvarez [ctb], Jeffrey S. Damrauer [ctb], Scott Floyd\n[ctb], Joshua Granek [ctb], Andrew Allen [ctb], Cliburn Chan\n[ctb]",
  "Maintainer": "Jiaxing Lin <jiaxing.lin@duke.edu>",
  "Description": "This Rcpp-based package implements a highly efficient data\nstructure and algorithm for performing alignment of short reads\nfrom CRISPR or shRNA screens to reference barcode library.\nSequencing error are considered and matching qualities are\nevaluated based on Phred scores. A Bayes' classifier is\nemployed to predict the originating barcode of a read. The\npackage supports provision of user-defined probability models\nfor evaluating matching qualities. The package also supports\nmulti-threading.",
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  "biocViews": "ImmunoOncology, Alignment, CRISPR, Sequencing,\nSequenceMatching, MultipleSequenceAlignment, Software, ATACSeq",
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