{
  "_id": "6a28fe24732311cd8758fffc",
  "Package": "beachmat.tiledb",
  "Version": "1.4.0",
  "Date": "2025-07-13",
  "Title": "beachmat bindings for TileDB-backed matrices",
  "Description": "Extends beachmat to initialize tatami matrices from\nTileDB-backed arrays. This allows C++ code in downstream\npackages to directly call the TileDB C/C++ library to access\narray data, without the need for block processing via\nDelayedArray. Developers only need to import this package to\nautomatically extend the capabilities of\nbeachmat::initializeCpp to TileDBArray instances.",
  "Authors@R": "person(\"Aaron\", \"Lun\", role = c(\"aut\", \"cre\"), email = \"infinite.monkeys.with.keyboards@gmail.com\")",
  "biocViews": "DataRepresentation, DataImport, Infrastructure",
  "License": "GPL-3",
  "NeedsCompilation": "yes",
  "VignetteBuilder": "knitr",
  "SystemRequirements": "C++17",
  "URL": "https://github.com/tatami-inc/beachmat.tiledb",
  "BugReports": "https://github.com/tatami-inc/beachmat.tiledb/issues",
  "RoxygenNote": "7.3.2",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "cmake git libzstd-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 13:04:06 UTC",
  "RemoteUrl": "https://github.com/bioc/beachmat.tiledb",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
  "Packaged": {
    "Date": "2026-06-08 11:03:17 UTC",
    "User": "root"
  },
  "Author": "Aaron Lun [aut, cre]",
  "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
  "MD5sum": "c4ad980ed3efd6a49ae64b262c30e468",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "beachmat.tiledb_1.4.0.tar.gz",
  "_fileid": "9741129f1233bd9e4119ce8c2aab5ee88f8ecc8aa0e8ee77c889da2e4f992c08",
  "_filesize": 125493,
  "_sha256": "9741129f1233bd9e4119ce8c2aab5ee88f8ecc8aa0e8ee77c889da2e4f992c08",
  "_created": "2026-06-08T11:03:17.000Z",
  "_published": "2026-06-10T06:03:16.664Z",
  "_jobs": [
    {
      "job": 80492008585,
      "time": 217,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7478467745"
    },
    {
      "job": 80492008172,
      "time": 179,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 80492008794,
      "time": 355,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7478515312"
    },
    {
      "job": 80492008158,
      "time": 151,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 80492008592,
      "time": 322,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7478503866"
    },
    {
      "job": 80492008898,
      "time": 203,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7478462615"
    },
    {
      "job": 80492008545,
      "time": 522,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7478572087"
    },
    {
      "job": 80492008734,
      "time": 292,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7478493357"
    },
    {
      "job": 80492008729,
      "time": 483,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7478558646"
    },
    {
      "job": 80492008140,
      "time": 335,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7478394137"
    },
    {
      "job": 80492008020,
      "time": 172,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 80492008024,
      "time": 84,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 80492008073,
      "time": 78,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 80492008122,
      "time": 79,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 4
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/beachmat.tiledb",
  "_commit": {
    "id": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777381446
  },
  "_maintainer": {
    "name": "Aaron Lun",
    "email": "infinite.monkeys.with.keyboards@gmail.com",
    "login": "ltla",
    "twitter": "@realAaronLun",
    "description": "(ノಠ益ಠ)ノ彡┻━┻\n",
    "uuid": 8166669
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "assorthead",
      "role": "LinkingTo"
    },
    {
      "package": "beachmat",
      "role": "LinkingTo"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "beachmat",
      "role": "Imports"
    },
    {
      "package": "tiledb",
      "role": "Imports"
    },
    {
      "package": "TileDBArray",
      "role": "Imports"
    },
    {
      "package": "DelayedArray",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "Matrix",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-29",
      "n": 2
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.5.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.4.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "datarepresentation",
    "dataimport",
    "infrastructure",
    "cpp"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ltla",
      "count": 16,
      "uuid": 8166669
    },
    {
      "user": "jwokaty",
      "count": 6,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 202,
    "source": "https://www.bioconductor.org/packages/stats/bioc/beachmat.tiledb"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/tatami-inc/beachmat.tiledb",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/beachmat.tiledb.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/tatami-inc/beachmat.tiledb",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "initializeCpp",
    "initializeOptions",
    "loadIntoMemory"
  ],
  "_help": [
    {
      "page": "initializeCpp",
      "title": "Initialize TileDB-backed matrices",
      "topics": [
        "initializeCpp",
        "initializeCpp,TileDBArraySeed-method"
      ]
    },
    {
      "page": "initializeOptions",
      "title": "Options for TileDB matrices",
      "topics": [
        "initializeOptions"
      ]
    },
    {
      "page": "loadIntoMemory",
      "title": "Load a TileDB matrix into memory",
      "topics": [
        "loadIntoMemory"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/beachmat.tiledb/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "assorthead",
    "beachmat",
    "BiocGenerics",
    "bit",
    "bit64",
    "DelayedArray",
    "generics",
    "IRanges",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "nanoarrow",
    "nanotime",
    "Rcpp",
    "RcppCCTZ",
    "RcppDate",
    "RcppInt64",
    "RcppSpdlog",
    "S4Arrays",
    "S4Vectors",
    "SparseArray",
    "spdl",
    "tiledb",
    "TileDBArray",
    "XVector",
    "zoo"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "userguide.Rmd",
      "filename": "userguide.html",
      "title": "Using TileDB-backed matrices with beachmat",
      "author": "Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "For users",
        "For developers",
        "Session information"
      ],
      "created": "2024-09-30 05:36:03",
      "modified": "2024-09-30 05:36:03",
      "commits": 1
    }
  ],
  "_score": 4.653212513775344,
  "_indexed": false,
  "_nocasepkg": "beachmat.tiledb",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/beachmat.tiledb",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4.0",
      "date": "2026-06-08T11:07:53.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "687c5c13073fa33b319b742aef0937fa519b0c6c31b9806cb0eadd7cf60ac2bf",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.4.0",
      "date": "2026-06-08T11:07:30.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "8628c4fe1bb2f3b96bdf8fd2c34f04517440aebd9e9b4ff7f5ff882da677cf1c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4.0",
      "date": "2026-06-08T11:06:10.000Z",
      "arch": "aarch64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "72cec301b3ce6c1ba36679069ec6ae42819d42e356b6728a2835e3359af7c7bb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4.0",
      "date": "2026-06-08T11:08:19.000Z",
      "arch": "x86_64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "d50d156fcc4f17fc675fb14961bd20b91c69814b586cd7dadbcc481c1d4f6bea",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.4.0",
      "date": "2026-06-08T11:06:48.000Z",
      "arch": "aarch64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "8a078df0694ad98f2381df3ae7b47a8021fb59a5341a0d3695a4cb9f23ef0f1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.4.0",
      "date": "2026-06-08T11:07:45.000Z",
      "arch": "x86_64",
      "commit": "0953beb90954c9289dc354efb85ac37f17cb0b2b",
      "fileid": "1ee624eb99189ef5a348fc0d0f439b96c0815f267364dab0b8aa79a0a318532e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27133057702"
    }
  ]
}