{ "_id": "6a194228acfb0bcc41dd7728", "Package": "bioDist", "Title": "Different distance measures", "Version": "1.84.0", "Author": "B. Ding, R. Gentleman and Vincent Carey", "Description": "A collection of software tools for calculating distance\nmeasures.", "Maintainer": "Bioconductor Package Maintainer\n", "License": "Artistic-2.0", "biocViews": "Clustering, Classification", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:30:53 UTC", "RemoteUrl": "https://github.com/bioc/bioDist", "RemoteRef": "RELEASE_3_23", "RemoteSha": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 06:42:17 UTC", "User": "root" }, "MD5sum": "03bf2fb564b72ab014a1fd7ab5d9338a", "_user": "bioc-release", "_type": "src", "_file": "bioDist_1.84.0.tar.gz", "_fileid": "652a324e4c4f1e7bfe1313188a7359128541583ff2fc3501156b4ffb905b26b1", "_filesize": 281204, "_sha256": "652a324e4c4f1e7bfe1313188a7359128541583ff2fc3501156b4ffb905b26b1", "_created": "2026-05-29T06:42:17.000Z", "_published": "2026-05-29T07:37:12.505Z", "_jobs": [ { "job": 78451399513, "time": 114, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7284724156" }, { "job": 78451399494, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7284734256" }, { "job": 78451399499, "time": 152, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7284733071" }, { "job": 78451399515, "time": 102, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7285541198" }, { "job": 78451399517, "time": 77, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7285531593" }, { "job": 78451105947, "time": 145, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7284697420" }, { "job": 78451399501, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7284719959" }, { "job": 78451399536, "time": 82, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7284716985" }, { "job": 78451399524, "time": 79, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7284716520" }, { "job": 78451399518, "time": 77, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7284716406" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/bioDist", "_commit": { "id": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379453 }, "_maintainer": { "name": "Bioconductor Package Maintainer", "email": "maintainer@bioconductor.org", "login": "bioconductor-bot", "description": "", "uuid": 11681645 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "KernSmooth", "role": "Depends" }, { "package": "locfit", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 3, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23" } ], "_topics": [ "clustering", "classification" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 668, "source": "https://www.bioconductor.org/packages/stats/bioc/bioDist" }, "_mentions": 15, "_searchresults": 66, "_rbuild": "4.6.0", "_assets": [ "extra/bioDist.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "closest.top", "cor.dist", "euc", "KLD.matrix", "KLdist.matrix", "man", "MIdist", "mutualInfo", "spearman.dist", "tau.dist" ], "_help": [ { "page": "closest.top", "title": "Find the closest genes.", "topics": [ "closest.top" ] }, { "page": "cor.dist", "title": "Pearson correlational distance", "topics": [ "cor.dist", "cor.dist,eSet-method", "cor.dist,matrix-method" ] }, { "page": "euc", "title": "Euclidean distance", "topics": [ "euc", "euc,eSet-method", "euc,matrix-method" ] }, { "page": "KLD.matrix", "title": "Continuous version of Kullback-Leibler Distance (KLD)", "topics": [ "KLD.matrix", "KLD.matrix,eSet-method", "KLD.matrix,list-method", "KLD.matrix,matrix-method" ] }, { "page": "KLdist.matrix", "title": "Discrete version of Kullback-Leibler Distance (KLD)", "topics": [ "KLdist.matrix", "KLdist.matrix,eSet-method", "KLdist.matrix,list-method", "KLdist.matrix,matrix-method" ] }, { "page": "man", "title": "Manhattan distance", "topics": [ "man", "man,eSet-method", "man,matrix-method" ] }, { "page": "mutualInfo", "title": "Mutual Information", "topics": [ "MIdist", "MIdist,ExpressionSet-method", "MIdist,matrix-method", "mutualInfo", "mutualInfo,ExpressionSet-method", "mutualInfo,matrix-method" ] }, { "page": "spearman.dist", "title": "Spearman correlational distance", "topics": [ "spearman.dist", "spearman.dist,ExpressionSet-method", "spearman.dist,matrix-method" ] }, { "page": "tau.dist", "title": "Kendall's tau correlational distance", "topics": [ "tau.dist", "tau.dist,ExpressionSet-method", "tau.dist,matrix-method" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "generics", "KernSmooth" ], "_vignettes": [ { "source": "bioDist.Rnw", "filename": "bioDist.pdf", "title": "bioDist Introduction", "engine": "utils::Sweave", "headings": [], "created": "2013-10-25 21:19:52", "modified": "2013-10-25 21:19:52", "commits": 1 } ], "_score": 6.074816440645175, "_indexed": false, "_nocasepkg": "biodist", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/bioDist", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.84.0", "date": "2026-05-29T06:44:51.000Z", "distro": "noble", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "346537f7377b246c17e6e9e0af1040b607a1c7179bd25c918bd493303c7a67fc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.6.0", "os": "linux", "version": "1.84.0", "date": "2026-05-29T06:44:47.000Z", "distro": "noble", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "2af1c5f44a2e954c872019aff8059462c0fd773ee1218cf7ee199b90d16ddc8c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.5.3", "os": "mac", "version": "1.84.0", "date": "2026-05-29T07:36:42.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "6449f99834d616edca2522d8f12d5611ae7141cc12e45c4dd9b1ba1f42953714", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.6.0", "os": "mac", "version": "1.84.0", "date": "2026-05-29T07:36:05.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "143051785b5b7c25fa789c568b91c9b3b1f306edf10f77b9590950a78b7daef2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.6.0", "os": "wasm", "version": "1.84.0", "date": "2026-05-29T06:44:07.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "8eb2c5f882882e2a7f0a7b906ac20df66ddf2111c96b7cb34c64818d66f674ae", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.7.0", "os": "win", "version": "1.84.0", "date": "2026-05-29T06:43:32.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "45fc6877433028406bfec6c9234e840bcb9bcecb0b71163cd40fb668e2f0ff4e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.5.3", "os": "win", "version": "1.84.0", "date": "2026-05-29T06:43:30.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "aef805e73576856ac1ed2873b31724de35a901a4e282f1bfcca09491d0d0d503", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" }, { "r": "4.6.0", "os": "win", "version": "1.84.0", "date": "2026-05-29T06:43:30.000Z", "commit": "d1ecebb186ccd75316a99f56445a4c7cbef41b7e", "fileid": "2f3215adb65a10e525b3640fdc3bdfd1e9b67af73d27bc799b7c6f25866e7123", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622372561" } ] }