{
  "_id": "6a1adef21d7bb097a09ebec1",
  "Package": "brendaDb",
  "Type": "Package",
  "Title": "The BRENDA Enzyme Database",
  "Version": "1.26.0",
  "Authors@R": "person(\"Yi\", \"Zhou\", email = \"yi.zhou@uga.edu\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0969-3993\"))",
  "Description": "R interface for importing and analyzing enzyme information\nfrom the BRENDA database.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "biocViews": "ThirdPartyClient, Annotation, DataImport",
  "URL": "https://github.com/y1zhou/brendaDb",
  "BugReports": "https://github.com/y1zhou/brendaDb/issues",
  "RoxygenNote": "7.2.3",
  "Roxygen": "list(markdown = TRUE)",
  "SystemRequirements": "C++11",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libssl-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:50:45 UTC",
  "RemoteUrl": "https://github.com/bioc/brendaDb",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-30 09:14:57 UTC",
    "User": "root"
  },
  "Author": "Yi Zhou [aut, cre] (ORCID: <https://orcid.org/0000-0003-0969-3993>)",
  "Maintainer": "Yi Zhou <yi.zhou@uga.edu>",
  "MD5sum": "46679a1848e6641f2660668a148fe590",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "brendaDb_1.26.0.tar.gz",
  "_fileid": "9516e2bc7043165e53f1ec5082e4749b7d943a8ab141f262d31af2145ac9b026",
  "_filesize": 485727,
  "_sha256": "9516e2bc7043165e53f1ec5082e4749b7d943a8ab141f262d31af2145ac9b026",
  "_created": "2026-05-30T09:14:57.000Z",
  "_published": "2026-05-30T12:58:26.775Z",
  "_jobs": [
    {
      "job": 78639008304,
      "time": 174,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307155659"
    },
    {
      "job": 78639008339,
      "time": 204,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7307123705"
    },
    {
      "job": 78639008341,
      "time": 229,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7307161269"
    },
    {
      "job": 78639008334,
      "time": 180,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307121325"
    },
    {
      "job": 78639008346,
      "time": 234,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307161801"
    },
    {
      "job": 78639008324,
      "time": 101,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7308345160"
    },
    {
      "job": 78639008308,
      "time": 289,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7307143652"
    },
    {
      "job": 78639008323,
      "time": 116,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7308348989"
    },
    {
      "job": 78639008306,
      "time": 237,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307144201"
    },
    {
      "job": 78638655740,
      "time": 250,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307103432"
    },
    {
      "job": 78639008299,
      "time": 151,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307153598"
    },
    {
      "job": 78639008332,
      "time": 164,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7307154468"
    },
    {
      "job": 78639008320,
      "time": 181,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7307155058"
    },
    {
      "job": 78639008330,
      "time": 184,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307156277"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 8
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/brendaDb",
  "_commit": {
    "id": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380645
  },
  "_maintainer": {
    "name": "Yi Zhou",
    "email": "yi.zhou@uga.edu",
    "login": "y1zhou",
    "orcid": "0000-0003-0969-3993",
    "description": "antibody design/optimization ⸱ de novo protein design ⸱ drug discovery ⸱ AIDD",
    "uuid": 17245097
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "BiocFileCache",
      "role": "Imports"
    },
    {
      "package": "rappdirs",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.27.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.26.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "thirdpartyclient",
    "annotation",
    "dataimport",
    "brenda",
    "database",
    "enzyme",
    "hacktoberfest",
    "cpp"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "y1zhou",
      "count": 174,
      "uuid": 17245097
    },
    {
      "user": "nturaga",
      "count": 12,
      "uuid": 2746443
    },
    {
      "user": "jwokaty",
      "count": 2,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 366,
    "source": "https://www.bioconductor.org/packages/stats/bioc/brendaDb"
  },
  "_devurl": "https://github.com/y1zhou/brendadb",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/brendaDb.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/y1zhou/brendadb",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "DownloadBrenda",
    "ExtractField",
    "ID2Enzyme",
    "is.brenda.deprecated.entry",
    "is.brenda.entry",
    "QueryBrenda",
    "ReadBrenda",
    "ShowFields"
  ],
  "_datasets": [
    {
      "name": "acronyms",
      "title": "Information fields and their corresponding acronyms.",
      "object": "acronyms",
      "file": "acronyms.RData",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "field",
        "acronym"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "brendaDb-package",
      "title": "brendaDb: the BRENDA enzyme database.",
      "topics": [
        "brendaDb-package",
        "brendaDb"
      ]
    },
    {
      "page": "DownloadBrenda",
      "title": "Download and unzip the BRENDA text file.",
      "topics": [
        "DownloadBrenda"
      ]
    },
    {
      "page": "ExtractField",
      "title": "Extract a specific field from a brenda.entries object.",
      "topics": [
        "ExtractField"
      ]
    },
    {
      "page": "ID2Enzyme",
      "title": "A helper function for converting names/synonyms to EC numbers.",
      "topics": [
        "ID2Enzyme"
      ]
    },
    {
      "page": "print.brenda.entries",
      "title": "Show the number of regular and transferred/deleted brenda.entry objects in the brenda.entries list.",
      "topics": [
        "print.brenda.entries"
      ]
    },
    {
      "page": "print.brenda.entry",
      "title": "Show the non-empty fields in the query result.",
      "topics": [
        "print.brenda.entry"
      ]
    },
    {
      "page": "QueryBrenda",
      "title": "Query for multiple enzymes.",
      "topics": [
        "QueryBrenda"
      ]
    },
    {
      "page": "ReadBrenda",
      "title": "Read BRENDA text file into matrix.",
      "topics": [
        "ReadBrenda"
      ]
    },
    {
      "page": "ReadBrendaFile",
      "title": "Read raw BRENDA text file.",
      "topics": [
        "ReadBrendaFile"
      ]
    },
    {
      "page": "SeparateEntries",
      "title": "Convert vector of lines to matrix.",
      "topics": [
        "SeparateEntries"
      ]
    },
    {
      "page": "ShowFields",
      "title": "Show all unique BRENDA fields and their corresponding acronyms.",
      "topics": [
        "ShowFields"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/brendaDb/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "askpass",
    "BH",
    "BiocFileCache",
    "BiocParallel",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "fastmap",
    "filelock",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "glue",
    "httr2",
    "lambda.r",
    "lifecycle",
    "magrittr",
    "memoise",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "RSQLite",
    "snow",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "brendaDb.Rmd",
      "filename": "brendaDb.html",
      "title": "brendaDb",
      "author": "Yi Zhou",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Installation",
        "Getting Started",
        "Downloading the BRENDA Text File",
        "Making Queries",
        "Query for Multiple Enzymes",
        "Query Specific Fields",
        "Query Specific Organisms",
        "Extract Information in Query Results",
        "Foreign ID Retrieval",
        "Querying Synonyms",
        "BioCyc Pathways",
        "Additional Information"
      ],
      "created": "2019-08-13 01:54:06",
      "modified": "2022-12-10 17:14:47",
      "commits": 6
    }
  ],
  "_score": 4.6020599913279625,
  "_indexed": false,
  "_nocasepkg": "brendadb",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/brendaDb",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.26.0",
      "date": "2026-05-30T09:18:04.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "4e8409255745f3df9aaaa920d43328ecd4de1d18a39d5e43ee536c3f646d371d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.26.0",
      "date": "2026-05-30T09:24:40.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "4a1490923bb94795362e375af26e1de755628878f23fae6268b1058905b0ab57",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.26.0",
      "date": "2026-05-30T09:17:43.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "65b6892bcc637922f1e07841dbe023885f58fb0b31033d856d9cacf34c065b2e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.26.0",
      "date": "2026-05-30T09:24:52.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "2365a4166527eafa9c101cf10d24d624b4ac029a4f7fc96f22775549d835e23b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.26.0",
      "date": "2026-05-30T12:56:57.000Z",
      "arch": "aarch64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "740da9ef5be3aec5e5d54c6cd2cbf3d597766977a6f7cd866149faf8283f4c84",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.26.0",
      "date": "2026-05-30T09:20:49.000Z",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "855b3c2221cfbeea02b1392ba90396195cd87563805cabcb7eb36db65920709a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.26.0",
      "date": "2026-05-30T12:57:34.000Z",
      "arch": "aarch64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "c78006276f0d516661208b6fa78a4aa6532803b6b22bbb12f9b72d2d67dbe7cf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.26.0",
      "date": "2026-05-30T09:21:07.000Z",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "6e2f52a96b6d3f36f21b002d415f3662b2fe45c8b56bf607f2a3fac6a4b543c9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.26.0",
      "date": "2026-05-30T09:24:06.000Z",
      "arch": "emscripten",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "5934b4a95f3fda41775aae6161498522eedcb78c24da3b7599b50ce71dbbc8f9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.26.0",
      "date": "2026-05-30T09:22:56.000Z",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "938ea64a6494ace4954b8c25e7ee2eb60f845a2efdc2232fd35a3bc49b50306d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.26.0",
      "date": "2026-05-30T09:23:06.000Z",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "7de60ae80a93dcea1d841fe1980d3817cc083743c0dc34dcc4de7794c3990d21",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.26.0",
      "date": "2026-05-30T09:23:08.000Z",
      "arch": "x86_64",
      "commit": "c57cd090ed9cb832f061651ff3ea946d7c42eb1c",
      "fileid": "9de036115558905938f2fb364e83006ffbcdbf1e876f679507fe2c2ebaf96fa5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26626127524"
    }
  ]
}