{ "_id": "6aca2c81fe5cc25786e850f6", "Package": "ccdata", "Title": "Data for Combination Connectivity Mapping (ccmap) Package", "Version": "1.38.0", "Author": "Alex Pickering", "Maintainer": "Alex Pickering ", "Description": "This package contains microarray gene expression data\ngenerated from the Connectivity Map build 02 and LINCS l1000.\nThe data are used by the ccmap package to find drugs and drug\ncombinations to mimic or reverse a gene expression signature.", "License": "MIT + file LICENSE", "LazyData": "false", "biocViews": "ExperimentData, MicroarrayData, ExpressionData", "RoxygenNote": "6.0.1", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:30:05 UTC", "RemoteUrl": "https://git.bioconductor.org/packages/ccdata", "RemoteRef": "RELEASE_3_23", "RemoteSha": "76401058fd187df48ac9e443226e0513045f705c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:13:06 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "ccdata_1.38.0.tar.gz", "_fileid": "https://r2.ropensci.org/6ebd09cf8c27219d4ab08fc73befff86575a31ee5e2c523c666cf57581fb5a7d", "_filesize": 921819574, "_sha256": "6ebd09cf8c27219d4ab08fc73befff86575a31ee5e2c523c666cf57581fb5a7d", "_expires": "2027-01-18T12:15:14.000Z", "_created": "2026-10-10T11:13:06.000Z", "_published": "2026-10-10T12:16:00.703Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047244843", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 5 }, "_upstream": "https://git.bioconductor.org/packages/ccdata", "_commit": { "id": "76401058fd187df48ac9e443226e0513045f705c", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379405 }, "_maintainer": { "name": "Alex Pickering", "email": "alexvpickering@gmail.com", "login": "alexvpickering", "description": "", "uuid": 15719520 }, "_distro": "resolute", "_jobs": [ { "job": 114209299700, "time": 184, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11669023179" }, { "job": 114209299752, "time": 408, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11669910035" }, { "job": 114209299730, "time": 378, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11669800101" }, { "job": 114199184636, "time": 3592, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668754431" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3", "role": "Depends" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.1", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "microarraydata", "expressiondata", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 23, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/ccdata.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "LICENSE" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "cmap_es", "title": "Effect size values for Connectivity Map build 02 drugs.", "object": "cmap_es", "file": "cmap_es.rda", "class": [ "matrix", "array" ], "fields": [], "rows": 13832, "table": true, "tojson": true }, { "name": "cmap_var", "title": "Variance values for Connectivity Map build 02 drugs.", "object": "cmap_var", "file": "cmap_var.rda", "class": [ "matrix", "array" ], "fields": [], "rows": 13832, "table": true, "tojson": true }, { "name": "genes", "title": "HGNC symbols used for NNet predictions.", "object": "genes", "file": "genes.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "l1000_es", "title": "Effect size values for LINCS l1000 signatures.", "object": "l1000_es", "file": "l1000_es.rda", "class": [ "matrix", "array" ], "fields": [], "rows": 1001, "table": true, "tojson": true }, { "name": "net1", "title": "Neural network model 1 for treatment combinations.", "object": "net1", "file": "net1.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "net2", "title": "Neural network model 2 for treatment combinations.", "object": "net2", "file": "net2.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "xgb_mod", "title": "XGBoost model for treatment combinations.", "object": "xgb_mod", "file": "xgb_mod.rda", "class": [ "xgb.Booster" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "cmap_es", "title": "Effect size values for Connectivity Map build 02 drugs.", "topics": [ "cmap_es" ] }, { "page": "cmap_var", "title": "Variance values for Connectivity Map build 02 drugs.", "topics": [ "cmap_var" ] }, { "page": "genes", "title": "HGNC symbols used for NNet predictions.", "topics": [ "genes" ] }, { "page": "l1000_es", "title": "Effect size values for LINCS l1000 signatures.", "topics": [ "l1000_es" ] }, { "page": "net1", "title": "Neural network model 1 for treatment combinations.", "topics": [ "net1" ] }, { "page": "net2", "title": "Neural network model 2 for treatment combinations.", "topics": [ "net2" ] }, { "page": "xgb_mod", "title": "XGBoost model for treatment combinations.", "topics": [ "xgb_mod" ] } ], "_rundeps": [], "_score": 2.6627578316815743, "_indexed": false, "_nocasepkg": "ccdata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/ccdata", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.38.0", "date": "2026-10-10T12:09:49.000Z", "distro": "resolute", "commit": "76401058fd187df48ac9e443226e0513045f705c", "fileid": "https://r2.ropensci.org/60071afb09d607b04e2369b4a0986f752c2f77e90819b3a767eb9a4b1be94daa", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047244843" }, { "r": "4.6.1", "os": "linux", "version": "1.38.0", "date": "2026-10-10T12:10:21.000Z", "distro": "resolute", "commit": "76401058fd187df48ac9e443226e0513045f705c", "fileid": "https://r2.ropensci.org/d8b02668a157176080a78bf62407db3de4b4401d351358a32ded98ca13c6f933", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047244843" } ] }