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      "filename": "celaref_doco.html",
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      "headings": [
        "Overview",
        "Workflow",
        "Prepare dataset",
        "Within dataset differential expression",
        "Query-Reference comparison",
        "Output",
        "Interpreting output",
        "Assigning labels to clusters",
        "Using the package",
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        "From tables or flat files",
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        "Reading microarray data",
        "Input filtering and Pre-processing",
        "Filtering cells and low-expression genes",
        "Converting IDs",
        "Within-experiment differential expression",
        "Running comparisions",
        "Compare groups to reference",
        "Compare groups within a single dataset",
        "Make labels for groups",
        "Special case: Saving get_the_up_genes_for_all_possible_groups output",
        "Example Analyses",
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        "Mouse tissues - Similar and different",
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      "created": "2018-02-02 04:09:06",
      "modified": "2019-04-17 07:04:25",
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