{
  "_id": "6aca2007fe5cc25786e84f80",
  "Package": "cfToolsData",
  "Title": "ExperimentHub data for the cfTools package",
  "Version": "1.10.0",
  "Authors@R": "c(\nperson(given = \"Ran\",\nfamily = \"Hu\",\nrole = c(\"aut\", \"cre\"),\nemail = \"huran@ucla.edu\",\ncomment = c(ORCID = \"0000-0002-0563-8957\")),\nperson(\"Shuo\", \"Li\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1960-6016\")),\nperson(c(\"Xianghong\", \"Jasmine\"), \"Zhou\",\nrole = \"aut\",\nemail = \"XJZhou@mednet.ucla.edu\",\ncomment = c(ORCID = \"0000-0002-4522-7490\")),\nperson(\"Wenyuan\", \"Li\",\nrole = \"aut\",\nemail = \"WenyuanLi@mednet.ucla.edu\",\ncomment = c(ORCID = \"0000-0002-5029-8525\")))",
  "Description": "The cfToolsData package supplies the data for the cfTools\npackage. It contains two pre-trained deep neural network (DNN)\nmodels for the cfSort function. Additionally, it includes the\nshape parameters of beta distribution characterizing\nmethylation markers associated with four tumor types for the\nCancerDetector function, as well as the parameters\ncharacterizing methylation markers specific to 29 primary human\ntissue types for the cfDeconvolve function.",
  "License": "file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "biocViews": "ExperimentHub, ExperimentData, ReproducibleResearch,\nDiseaseModel, CancerData, Tissue",
  "URL": "https://github.com/jasminezhoulab/cfToolsData",
  "BugReports": "https://github.com/jasminezhoulab/cfToolsData/issues",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:36:59 UTC",
  "RemoteUrl": "https://github.com/bioc/cfToolsData",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "63b2d814354a3bd10a651cdc206f81f6c8325ac9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:16:41 UTC",
    "User": "root"
  },
  "Author": "Ran Hu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0563-8957>),\nShuo Li [aut] (ORCID: <https://orcid.org/0000-0002-1960-6016>),\nXianghong Jasmine Zhou [aut] (ORCID:\n<https://orcid.org/0000-0002-4522-7490>),\nWenyuan Li [aut] (ORCID: <https://orcid.org/0000-0002-5029-8525>)",
  "Maintainer": "Ran Hu <huran@ucla.edu>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "cfToolsData_1.10.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/294828426319a40709fd1b910732932dc219e63c3acadfa49dc572be1cb2062f",
  "_filesize": 96964,
  "_sha256": "294828426319a40709fd1b910732932dc219e63c3acadfa49dc572be1cb2062f",
  "_expires": "2027-01-18T11:22:45.000Z",
  "_created": "2026-10-10T11:16:41.000Z",
  "_published": "2026-10-10T11:22:47.175Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047638010",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 3
  },
  "_upstream": "https://github.com/bioc/cfToolsData",
  "_commit": {
    "id": "63b2d814354a3bd10a651cdc206f81f6c8325ac9",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379819
  },
  "_maintainer": {
    "name": "Ran Hu",
    "email": "huran@ucla.edu",
    "login": "rosehuran",
    "description": "UCLA PhD\n",
    "uuid": 29250431,
    "orcid": "0000-0002-0563-8957"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114200920056,
      "time": 248,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11667953043"
    },
    {
      "job": 114200920069,
      "time": 278,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11668666315"
    },
    {
      "job": 114200920077,
      "time": 324,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11668088146"
    },
    {
      "job": 114200334220,
      "time": 207,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11668491146"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "ExperimentHub",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "ExperimentHubData",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.11.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.10.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimenthub",
    "experimentdata",
    "reproducibleresearch",
    "diseasemodel",
    "cancerdata",
    "tissue",
    "datapkg"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "rosehuran",
      "count": 23,
      "uuid": 29250431
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "jasminezhoulab",
      "count": 1,
      "uuid": 26192143
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/jasminezhoulab/cftoolsdata",
  "_searchresults": 2,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/cfToolsData.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "COAD.tumorMarkerParams.hg19",
    "DNN1",
    "DNN2",
    "LIHC.tumorMarkerParams.hg19",
    "LUNG.tumorMarkerParams.hg19",
    "STAD.tumorMarkerParams.hg19",
    "tissueMarkerParams.annot",
    "tissueMarkerParams.hg19"
  ],
  "_help": [
    {
      "page": "cfToolsData",
      "title": "ExperimentHub datasets for the cfTools package",
      "topics": [
        "cfToolsData"
      ]
    },
    {
      "page": "COAD.tumorMarkerParams.hg19",
      "title": "Parameters of COAD markers",
      "topics": [
        "COAD.tumorMarkerParams.hg19"
      ]
    },
    {
      "page": "DNN1",
      "title": "Model DNN1",
      "topics": [
        "DNN1"
      ]
    },
    {
      "page": "DNN2",
      "title": "Model DNN2",
      "topics": [
        "DNN2"
      ]
    },
    {
      "page": "LIHC.tumorMarkerParams.hg19",
      "title": "Parameters of LIHC markers",
      "topics": [
        "LIHC.tumorMarkerParams.hg19"
      ]
    },
    {
      "page": "LUNG.tumorMarkerParams.hg19",
      "title": "Parameters of lung cancer markers",
      "topics": [
        "LUNG.tumorMarkerParams.hg19"
      ]
    },
    {
      "page": "STAD.tumorMarkerParams.hg19",
      "title": "Parameters of STAD markers",
      "topics": [
        "STAD.tumorMarkerParams.hg19"
      ]
    },
    {
      "page": "tissueMarkerParams.annot",
      "title": "Annotation of tissue markers",
      "topics": [
        "tissueMarkerParams.annot"
      ]
    },
    {
      "page": "tissueMarkerParams.hg19",
      "title": "Parameters of tissue markers",
      "topics": [
        "tissueMarkerParams.hg19"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/cfToolsData/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "cfToolsData.Rmd",
      "filename": "cfToolsData.html",
      "title": "cfToolsData package",
      "author": "Ran Hu, Shuo Li, Xianghong Jasmine Zhou, Wenyuan Li",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Session information"
      ],
      "created": "2023-09-15 17:18:29",
      "modified": "2023-10-05 01:09:33",
      "commits": 4
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": false,
  "_nocasepkg": "cftoolsdata",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/cfToolsData",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.10.0",
      "date": "2026-10-10T11:20:10.000Z",
      "distro": "resolute",
      "commit": "63b2d814354a3bd10a651cdc206f81f6c8325ac9",
      "fileid": "https://r2.ropensci.org/007a50ab4f3f8ac6ce75457c634d77f2d9027365406f904c0fa9dbdd5866b815",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047638010"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.10.0",
      "date": "2026-10-10T11:20:47.000Z",
      "distro": "resolute",
      "commit": "63b2d814354a3bd10a651cdc206f81f6c8325ac9",
      "fileid": "https://r2.ropensci.org/b45a99014bda03fcf621e76cace542763914cec5ebb3453f0dfbf3130a069450",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047638010"
    }
  ]
}