{
  "_id": "6a13eab3acfb0bcc41d2e26b",
  "Package": "chihaya",
  "Title": "Save Delayed Operations to a HDF5 File",
  "Description": "Saves the delayed operations of a DelayedArray to a HDF5\nfile. This enables efficient recovery of the DelayedArray's\ncontents in other languages and analysis frameworks.",
  "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"cre\", \"aut\"), email=\"infinite.monkeys.with.keyboards@gmail.com\")",
  "Version": "1.12.0",
  "Date": "2024-09-16",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/ArtifactDB/chihaya-R/issues",
  "URL": "https://github.com/ArtifactDB/chihaya-R",
  "SystemRequirements": "C++17, GNU make",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "biocViews": "DataImport, DataRepresentation",
  "Config/pak/sysreqs": "make libssl-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 13:00:11 UTC",
  "RemoteUrl": "https://github.com/bioc/chihaya",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-25 06:14:26 UTC",
    "User": "root"
  },
  "Author": "Aaron Lun [cre, aut]",
  "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
  "MD5sum": "6bfc777453c562de447d451b56da66a6",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "chihaya_1.12.0.tar.gz",
  "_fileid": "abff5c9c4b9122da1f03918faf3b04f0b295f171e81c7f1b8bcb6052a0739592",
  "_filesize": 183592,
  "_sha256": "abff5c9c4b9122da1f03918faf3b04f0b295f171e81c7f1b8bcb6052a0739592",
  "_created": "2026-05-25T06:14:26.000Z",
  "_published": "2026-05-25T06:22:43.730Z",
  "_jobs": [
    {
      "job": 77665579285,
      "time": 178,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192727284"
    },
    {
      "job": 77665579295,
      "time": 260,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7192742597"
    },
    {
      "job": 77665579309,
      "time": 416,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7192772632"
    },
    {
      "job": 77665579316,
      "time": 269,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192744170"
    },
    {
      "job": 77665579338,
      "time": 305,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192751050"
    },
    {
      "job": 77665579444,
      "time": 163,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7192724304"
    },
    {
      "job": 77665579307,
      "time": 385,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7192766281"
    },
    {
      "job": 77665579315,
      "time": 144,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192720318"
    },
    {
      "job": 77665579321,
      "time": 428,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192775530"
    },
    {
      "job": 77665132299,
      "time": 279,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192692432"
    },
    {
      "job": 77665579289,
      "time": 157,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 77665579298,
      "time": 294,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7192748743"
    },
    {
      "job": 77665579300,
      "time": 307,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7192751189"
    },
    {
      "job": 77665579319,
      "time": 403,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7192770410"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 8
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/chihaya",
  "_commit": {
    "id": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777381211
  },
  "_maintainer": {
    "name": "Aaron Lun",
    "email": "infinite.monkeys.with.keyboards@gmail.com",
    "login": "ltla",
    "twitter": "@realAaronLun",
    "description": "(ノಠ益ಠ)ノ彡┻━┻\n",
    "uuid": 8166669
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "DelayedArray",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rhdf5lib",
      "role": "LinkingTo"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "rhdf5",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "HDF5Array",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    },
    {
      "package": "BiocSingular",
      "role": "Suggests"
    },
    {
      "package": "ResidualMatrix",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.13.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.12.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dataimport",
    "datarepresentation",
    "curl",
    "openssl",
    "cpp"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ltla",
      "count": 62,
      "uuid": 8166669
    },
    {
      "user": "jwokaty",
      "count": 6,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 389,
    "source": "https://www.bioconductor.org/packages/stats/bioc/chihaya"
  },
  "_devurl": "https://github.com/artifactdb/chihaya-r",
  "_searchresults": 16,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/chihaya.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/artifactdb/chihaya-r",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".labelArrayGroup",
    ".labelOperationGroup",
    ".loadList",
    ".pickArrayType",
    ".saveDataset",
    ".saveList",
    "allowExternalSeeds",
    "knownArrays",
    "knownOperations",
    "loadDelayed",
    "saveDelayed",
    "saveDelayedObject",
    "validate"
  ],
  "_help": [
    {
      "page": "allowExternalSeeds",
      "title": "Allow saving of external seeds",
      "topics": [
        "allowExternalSeeds"
      ]
    },
    {
      "page": "chihaya-utils",
      "title": "Developer utilities for custom extensions",
      "topics": [
        ".labelArrayGroup",
        ".labelOperationGroup",
        ".loadList",
        ".pickArrayType",
        ".saveDataset",
        ".saveList",
        "chihaya-utils"
      ]
    },
    {
      "page": "knownOperations",
      "title": "Get or set loaders for operations/arrays",
      "topics": [
        "knownArrays",
        "knownOperations"
      ]
    },
    {
      "page": "loadDelayed",
      "title": "Load a DelayedMatrix",
      "topics": [
        "loadDelayed"
      ]
    },
    {
      "page": "saveDelayed",
      "title": "Save a DelayedMatrix",
      "topics": [
        "saveDelayed"
      ]
    },
    {
      "page": "saveDelayedObject",
      "title": "Save a delayed object",
      "topics": [
        "saveDelayedObject",
        "saveDelayedObject,DelayedArray-method"
      ]
    },
    {
      "page": "other",
      "title": "Saving other seed classes",
      "topics": [
        "saveDelayedObject,ANY-method"
      ]
    },
    {
      "page": "simple",
      "title": "Saving simple seed classes",
      "topics": [
        "saveDelayedObject,array-method",
        "saveDelayedObject,CsparseMatrix-method"
      ]
    },
    {
      "page": "ConstantArraySeed",
      "title": "Saving a ConstantArraySeed",
      "topics": [
        "saveDelayedObject,ConstantArraySeed-method"
      ]
    },
    {
      "page": "DelayedAbind",
      "title": "Saving a DelayedAbind",
      "topics": [
        "saveDelayedObject,DelayedAbind-method"
      ]
    },
    {
      "page": "DelayedAperm",
      "title": "Saving a DelayedAperm",
      "topics": [
        "saveDelayedObject,DelayedAperm-method"
      ]
    },
    {
      "page": "DelayedNaryIsoOp",
      "title": "Saving a DelayedNaryIsoOp",
      "topics": [
        "saveDelayedObject,DelayedNaryIsoOp-method"
      ]
    },
    {
      "page": "DelayedSetDimnames",
      "title": "Saving a DelayedSetDimnames",
      "topics": [
        "saveDelayedObject,DelayedSetDimnames-method"
      ]
    },
    {
      "page": "DelayedSubassign",
      "title": "Saving a DelayedSubassign",
      "topics": [
        "saveDelayedObject,DelayedSubassign-method"
      ]
    },
    {
      "page": "DelayedSubset",
      "title": "Saving a DelayedSubset",
      "topics": [
        "saveDelayedObject,DelayedSubset-method"
      ]
    },
    {
      "page": "DelayedUnaryIsoOpStack",
      "title": "Saving a DelayedUnaryIsoOpStack",
      "topics": [
        "saveDelayedObject,DelayedUnaryIsoOpStack-method"
      ]
    },
    {
      "page": "DelayedUnaryIsoOpWithArgs",
      "title": "Saving a DelayedUnaryIsoOpWithArgs",
      "topics": [
        "saveDelayedObject,DelayedUnaryIsoOpWithArgs-method"
      ]
    },
    {
      "page": "HDF5ArraySeed",
      "title": "Save HDF5-based seeds",
      "topics": [
        "saveDelayedObject,H5SparseMatrixSeed-method",
        "saveDelayedObject,HDF5ArraySeed-method"
      ]
    },
    {
      "page": "validate",
      "title": "Validate an artifact",
      "topics": [
        "validate"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/chihaya/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "BiocGenerics",
    "biocmake",
    "DelayedArray",
    "dir.expiry",
    "filelock",
    "generics",
    "h5mread",
    "HDF5Array",
    "IRanges",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "Rcpp",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "S4Arrays",
    "S4Vectors",
    "SparseArray",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "libcurl",
      "package": "libcurl4t64",
      "headers": "libcurl4-openssl-dev",
      "source": "curl",
      "version": "8.5.0-2ubuntu10.9",
      "name": "curl",
      "homepage": "https://curl.se/",
      "description": "easy-to-use client-side URL transfer library (OpenSSL flavour)"
    },
    {
      "shlib": "libcrypto",
      "package": "libssl3t64",
      "headers": "libssl-dev",
      "source": "openssl",
      "version": "3.0.13-0ubuntu3.9",
      "name": "openssl",
      "homepage": "https://www.openssl.org/",
      "description": "Secure Sockets Layer toolkit - shared libraries"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "userguide.Rmd",
      "filename": "userguide.html",
      "title": "Saving and reloading DelayedArray objects",
      "author": "Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Motivation",
        "Quick start",
        "More interesting seeds",
        "Session information"
      ],
      "created": "2021-05-04 23:01:54",
      "modified": "2024-09-16 16:15:31",
      "commits": 5
    }
  ],
  "_score": 4.204119982655925,
  "_indexed": false,
  "_nocasepkg": "chihaya",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/chihaya",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-05-25T06:17:54.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "ff688e1c512d861805e357117af64d69e8f2df96380b39c53196a4efd0beebbb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-05-25T06:20:02.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "caaab98afef1d645674d43d3eaf7249d7fbc9e5f64530ac235b48a923fed0896",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-05-25T06:18:01.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "1f4402dfa25a0602523da25b0acd0bf1d759213ce88c005c20f395fe8f02bc0a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.12.0",
      "date": "2026-05-25T06:18:29.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "c274a9f73ba3b243e3a675f7783fe783fc3acce91353131433a752f368992b2c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-05-25T06:16:25.000Z",
      "arch": "aarch64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "df837bba8d307f124fb5ba52aaa85092a5c9e35b1d4ce6712f79bb547bd4b1f8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-05-25T06:18:26.000Z",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "e6404e7e00a517d06ee08ba2b00e923d290cdf611586e06626435cea8ce67924",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-05-25T06:16:21.000Z",
      "arch": "aarch64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "16b804630dab8e68124a8e1defd598107651f00112a6eaa595d5b381ca14118f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.12.0",
      "date": "2026-05-25T06:18:36.000Z",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "bd3f4f0d5da06502f85ef0f0e8ddce60c07efb08e615bc8bbeb8733b668aab26",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-05-25T06:16:37.000Z",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "5130face01975cf4b16af9978c3c2651a993feb7c8f68c2355a68b47fa533a8d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-05-25T06:16:25.000Z",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "ed3b136241387625e1d23019bff863a5ef1abfaa0f2fc867a45ecbffbe3d584f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.12.0",
      "date": "2026-05-25T06:17:25.000Z",
      "arch": "x86_64",
      "commit": "3a931db93f3ae5980adee88f5c1e682c0189d1a1",
      "fileid": "73e2ce4f3ded71f0c4a07e325aba473d3455949148a5d7ae86983de0cf1c6d30",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26386190248"
    }
  ]
}