{ "_id": "6a37c6cc3efcd9bda442f291", "Package": "chromPlot", "Type": "Package", "Title": "Global visualization tool of genomic data", "Version": "1.40.0", "Date": "2017-03-08", "Author": "Ricardo A. Verdugo and Karen Y. Orostica", "Maintainer": "Karen Y. Orostica ", "Description": "Package designed to visualize genomic data along the\nchromosomes, where the vertical chromosomes are sorted by\nnumber, with sex chromosomes at the end.", "License": "GPL (>= 2)", "LazyLoad": "yes", "LazyData": "yes", "biocViews": "DataRepresentation, FunctionalGenomics, Genetics,\nSequencing, Annotation, Visualization", "Config/pak/sysreqs": "libicu-dev libpng-dev libxml2-dev libssl-dev\nzlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:42:43 UTC", "RemoteUrl": "https://github.com/bioc/chromPlot", "RemoteRef": "RELEASE_3_23", "RemoteSha": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 11:05:39 UTC", "User": "root" }, "MD5sum": "9a3761b2fe40287dee357c2eb48ec1f0", "_user": "bioc-release", "_type": "src", "_file": "chromPlot_1.40.0.tar.gz", "_fileid": "153e6dcaf1c03a9686711222046a330183c3daabc1b86bff4a1f96e3e652f383", "_filesize": 1526307, "_sha256": "153e6dcaf1c03a9686711222046a330183c3daabc1b86bff4a1f96e3e652f383", "_created": "2026-06-21T11:05:39.000Z", "_published": "2026-06-21T11:11:08.379Z", "_jobs": [ { "job": 82564738549, "time": 205, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7774681172" }, { "job": 82564738557, "time": 257, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7774687544" }, { "job": 82564738563, "time": 278, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7774690260" }, { "job": 82564738577, "time": 182, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7774678241" }, { "job": 82564738564, "time": 165, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7774676014" }, { "job": 82564393796, "time": 315, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7774654747" }, { "job": 82564738560, "time": 175, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7774677428" }, { "job": 82564738553, "time": 194, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7774679916" }, { "job": 82564738558, "time": 213, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7774682199" }, { "job": 82564738562, "time": 186, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7774678734" } ], "_bioccheck": { "error": 1, "warning": 1, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/chromPlot", "_commit": { "id": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380163 }, "_maintainer": { "name": "Karen Y. Orostica", "email": "korostica09@gmail.com", "login": "korostica", "description": "", "uuid": 33465419 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "stats", "role": "Depends" }, { "package": "utils", "role": "Depends" }, { "package": "graphics", "role": "Depends" }, { "package": "grDevices", "role": "Depends" }, { "package": "datasets", "role": "Depends" }, { "package": "base", "role": "Depends" }, { "package": "biomaRt", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "qtl", "role": "Suggests" }, { "package": "GenomicFeatures", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg19.knownGene", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23" } ], "_topics": [ "datarepresentation", "functionalgenomics", "genetics", "sequencing", "annotation", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 440, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 7, "_searchresults": 50, "_rbuild": "4.6.0", "_assets": [ "extra/chromPlot.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "chromPlot" ], "_datasets": [ { "name": "hg_cytoBandIdeo", "title": "cytoBandIdeo human", "object": "hg_cytoBandIdeo", "class": [ "data.frame" ], "fields": [ "Chrom", "Start", "End", "Name", "gieStain" ], "rows": 862, "table": true, "tojson": true }, { "name": "hg_gap", "title": "Human Gap", "object": "hg_gap", "class": [ "data.frame" ], "fields": [ "Chrom", "Start", "End", "Name" ], "rows": 457, "table": true, "tojson": true }, { "name": "mm10_cytoBandIdeo", "title": "cytoBandIdeo", "object": "mm10_cytoBandIdeo", "class": [ "data.frame" ], "fields": [ "Chrom", "Start", "End", "Name", "gieStain" ], "rows": 448, "table": true, "tojson": true }, { "name": "mm10_gap", "title": "Gaps", "object": "mm10_gap", "class": [ "data.frame" ], "fields": [ "Chrom", "Start", "End", "Name" ], "rows": 686, "table": true, "tojson": true } ], "_help": [ { "page": "chromPlot-package", "title": "Global visualization tool of genomic data", "topics": [ "chromPlot-package" ] }, { "page": "chromPlot", "title": "Global visualization tool of genomic data", "topics": [ "chromPlot" ] }, { "page": "hg_cytoBandIdeo", "title": "cytoBandIdeo human", "topics": [ "hg_cytoBandIdeo" ] }, { "page": "hg_gap", "title": "Human Gap", "topics": [ "hg_gap" ] }, { "page": "mm10_cytoBandIdeo", "title": "cytoBandIdeo", "topics": [ "mm10_cytoBandIdeo" ] }, { "page": "mm10_gap", "title": "Gaps", "topics": [ "mm10_gap" ] } ], "_rundeps": [ "AnnotationDbi", "askpass", "Biobase", "BiocFileCache", "BiocGenerics", "biomaRt", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "fastmap", "filelock", "generics", "GenomicRanges", "glue", "hms", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "prettyunits", "progress", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "xml2", "XVector" ], "_vignettes": [ { "source": "chromPlot.Rnw", "filename": "chromPlot.pdf", "title": "General Manual", "engine": "utils::Sweave", "headings": [ "Introduction", "Creating a plot with genomic coordinates", "Input data", "Types of data visualization", "Graphics settings", "Acknowledgments", "REFERENCES" ], "created": "2016-02-22 18:03:39", "modified": "2017-03-08 13:58:58", "commits": 2 } ], "_score": 4.845098040014257, "_indexed": false, "_nocasepkg": "chromplot", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/chromPlot", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.40.0", "date": "2026-06-21T11:09:06.000Z", "distro": "noble", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "57c68dd9e2f259ee8706798755795bf6e4ce27681644f038c56b275cd0b18155", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.6.0", "os": "linux", "version": "1.40.0", "date": "2026-06-21T11:09:26.000Z", "distro": "noble", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "1012a61f0e2f720f541a6b42ef106460b2a8024071c8a698636254d8dc15fa2f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.5.3", "os": "mac", "version": "1.40.0", "date": "2026-06-21T11:08:11.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "4eea2df04ff2d8e0d680973b0314c379a66b047a29ed4f23bbc9dba61e296616", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.6.0", "os": "mac", "version": "1.40.0", "date": "2026-06-21T11:07:56.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "5dadbd5ed4acfec6a37ad0614dae0e126df2dc92ab4a5bc4103c3360f04abce5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.6.0", "os": "wasm", "version": "1.40.0", "date": "2026-06-21T11:09:00.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "3808c74f92bca712cea4288f7e63842bfeaaa76ea71a6087559f9474344bd1bc", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.7.0", "os": "win", "version": "1.40.0", "date": "2026-06-21T11:07:52.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "629e032ef410a641cb6c8ea5e20666cac6508a4cc55ffadfb007921326557e99", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.5.3", "os": "win", "version": "1.40.0", "date": "2026-06-21T11:07:53.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "757b92efa148af2fc8f106173447e3235188b236c1135a224f44344d8e36ea43", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" }, { "r": "4.6.0", "os": "win", "version": "1.40.0", "date": "2026-06-21T11:07:46.000Z", "commit": "5fa07ae9e9e3bb0c5f09aca732afed95be9e1fd4", "fileid": "fde308b365fbe5349ce86c4f6fbd7aad9d58baa8072e2f0ff582d66800a9e8fd", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27902194914" } ] }