{ "_id": "6a1fce06b401979e73433631", "Package": "concordexR", "Title": "Identify Spatial Homogeneous Regions with concordex", "Version": "1.12.0", "Authors@R": "c(\nperson(\"Kayla\", \"Jackson\", , \"kaylajac@caltech.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6483-0108\")),\nperson(\"A. Sina\", \"Booeshaghi\", , \"alisina@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-6442-4502\")),\nperson(\"Angel\", \"Galvez-Merchan\", , \"agalvezm@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7420-8697\")),\nperson(\"Lambda\", \"Moses\", , \"dlu2@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7092-9427\")),\nperson(\"Alexandra\", \"Kim\", , \"alexandrasuriya@gmail.com\", role = \"ctb\"),\nperson(\"Laura\", \"Luebbert\", , \"lauraluebbert@caltech.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1379-2927\")),\nperson(\"Lior\", \"Pachter\", , \"lpachter@caltech.edu\", role = c(\"aut\", \"rev\", \"ths\"),\ncomment = c(ORCID = \"0000-0002-9164-6231\"))\n)", "Description": "Spatial homogeneous regions (SHRs) in tissues are domains\nthat are homogenous with respect to cell type composition. We\npresent a method for identifying SHRs using spatial\ntranscriptomics data, and demonstrate that it is efficient and\neffective at finding SHRs for a wide variety of tissue types.\nconcordex relies on analysis of k-nearest-neighbor (kNN)\ngraphs. The tool is also useful for analysis of non-spatial\ntranscriptomics data, and can elucidate the extent of\nconcordance between partitions of cells derived from clustering\nalgorithms, and transcriptomic similarity as represented in kNN\ngraphs.", "License": "Artistic-2.0", "URL": "https://github.com/pachterlab/concordexR,\nhttps://pachterlab.github.io/concordexR/", "BugReports": "https://github.com/pachterlab/concordexR/issues", "VignetteBuilder": "knitr", "biocViews": "SingleCell, Clustering, Spatial, Transcriptomics", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libglpk-dev libmagick++-dev gsfonts libicu-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 13:00:35 UTC", "RemoteUrl": "https://github.com/bioc/concordexR", "RemoteRef": "RELEASE_3_23", "RemoteSha": "792ab7eeeba4c220149ab949c7c27d7040152f4e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 06:34:33 UTC", "User": "root" }, "Author": "Kayla Jackson [aut, cre] (ORCID:\n),\nA. Sina Booeshaghi [aut] (ORCID:\n),\nAngel Galvez-Merchan [aut] (ORCID:\n),\nLambda Moses [aut] (ORCID: ),\nAlexandra Kim [ctb],\nLaura Luebbert [ctb] (ORCID: ),\nLior Pachter [aut, rev, ths] (ORCID:\n)", "Maintainer": "Kayla Jackson ", "MD5sum": "1499feef772290885cbdf76a9818c9b5", "_user": "bioc-release", "_type": "src", "_file": "concordexR_1.12.0.tar.gz", "_fileid": "7a02b43ae0354c5264958370754f771d01c69a7e9d3930ec090c584474bc69c0", "_filesize": 1060285, "_sha256": "7a02b43ae0354c5264958370754f771d01c69a7e9d3930ec090c584474bc69c0", "_created": "2026-06-03T06:34:33.000Z", "_published": "2026-06-03T06:47:34.289Z", "_jobs": [ { "job": 79235963400, "time": 259, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7377438834" }, { "job": 79235963384, "time": 731, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7377571324" }, { "job": 79235963387, "time": 448, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": 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