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  "Package": "consensusSeekeR",
  "Version": "1.40.0",
  "Date": "2025-10-14",
  "Title": "Detection of consensus regions inside a group of experiences\nusing genomic positions and genomic ranges",
  "Description": "This package compares genomic positions and genomic ranges\nfrom multiple experiments to extract common regions. The size\nof the analyzed region is adjustable as well as the number of\nexperiences in which a feature must be present in a potential\nregion to tag this region as a consensus region. In genomic\nanalysis where feature identification generates a position\nvalue surrounded by a genomic range, such as ChIP-Seq peaks and\nnucleosome positions, the replication of an experiment may\nresult in slight differences between predicted values. This\npackage enables the conciliation of the results into consensus\nregions.",
  "Authors@R": "c(person(\"Astrid\", \"Deschênes\", email=\"adeschen@hotmail.com\", \nrole=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0001-7846-6749\")),\nperson(\"Fabien Claude\", \"Lamaze\", email=\"fabien.lamaze.1@ulaval.ca\",\nrole=c(\"ctb\")),\nperson(\"Pascal\", \"Belleau\", email=\"pascal_belleau@hotmail.com\",\nrole=c(\"aut\"), comment=c(ORCID=\"0000-0002-0802-1071\")),\nperson(\"Arnaud\", \"Droit\", email=\"arnaud.droit@crchuq.ulaval.ca\",\nrole=c(\"aut\")))",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "URL": "https://github.com/adeschen/consensusSeekeR",
  "BugReports": "https://github.com/adeschen/consensusSeekeR/issues",
  "VignetteBuilder": "knitr",
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  "biocViews": "BiologicalQuestion, ChIPSeq, Genetics, MultipleComparison,\nTranscription, PeakDetection, Sequencing, Coverage",
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  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:42:12 UTC",
  "RemoteUrl": "https://github.com/bioc/consensusSeekeR",
  "RemoteRef": "RELEASE_3_23",
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  "Packaged": {
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    "User": "root"
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  "Author": "Astrid Deschênes [cre, aut] (ORCID:\n<https://orcid.org/0000-0001-7846-6749>),\nFabien Claude Lamaze [ctb],\nPascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),\nArnaud Droit [aut]",
  "Maintainer": "Astrid Deschênes <adeschen@hotmail.com>",
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  "_expires": "2027-01-01T08:06:50.000Z",
  "_created": "2026-09-23T07:54:30.000Z",
  "_published": "2026-09-23T08:06:52.320Z",
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      "source": "consensusSeekeR.Rmd",
      "filename": "consensusSeekeR.html",
      "title": "Detection of consensus regions inside a group of experiments",
      "author": "Astrid Deschênes, Fabien Claude Lamaze, Pascal Belleau and Arnaud Droit",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Licensing and citing",
        "Introduction",
        "The consensusSeekeR package",
        "Loading consensusSeekeR package",
        "Inputs",
        "Positions and Ranges",
        "Chromosomes information",
        "Read NarrowPeak files",
        "Case study: nucleosome positioning",
        "Comparing nucleosome positioning results from different software",
        "Case study: ChIP-Seq data",
        "ChIP-Seq replicates from one experiment",
        "ChIP-Seq data from multiple experiments",
        "Parameters",
        "Effect of the shrinkToFitPeakRegion parameter",
        "Effect of the expandToFitPeakRegion parameter",
        "Effect of the extendingSize parameter",
        "Parallelizing consensusSeekeR",
        "Acknowledgment",
        "Session info",
        "References"
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      "created": "2015-11-13 14:44:37",
      "modified": "2025-10-14 20:50:08",
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