{ "_id": "6aca1f8afe5cc25786e84ee7", "Package": "crisprScoreData", "Version": "1.16.0", "Date": "2022-10-12", "Title": "Pre-trained models for the crisprScore package", "Authors@R": "c(\nperson(\"Jean-Philippe\", \"Fortin\", email = \"fortin946@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")))", "biocViews": "ExperimentHub, Homo_sapiens_Data", "Description": "Provides an interface to access pre-trained models for\non-target and off-target gRNA activity prediction algorithms\nimplemented in the crisprScore package. Pre-trained model data\nare stored in the ExperimentHub database. Users should consider\nusing the crisprScore package directly to use and load the\npre-trained models.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "VignetteBuilder": "knitr", "BugReports": "https://github.com/crisprVerse/crisprScoreData", "URL": "https://github.com/crisprVerse/crisprScoreData/issues", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:36:02 UTC", "RemoteUrl": "https://github.com/bioc/crisprScoreData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "9613c97523f93ce360a24eec685e8a8b845d4dd1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:15:49 UTC", "User": "root" }, "Author": "Jean-Philippe Fortin [aut, cre, cph]", "Maintainer": "Jean-Philippe Fortin ", "_user": "bioc-release", "_type": "src", "_file": "crisprScoreData_1.16.0.tar.gz", "_fileid": "https://r2.ropensci.org/358495b7794cca9646078a03bf79922910d5de32ac2b9c0fe07fcbcea3fa882f", "_filesize": 6234806, "_sha256": "358495b7794cca9646078a03bf79922910d5de32ac2b9c0fe07fcbcea3fa882f", "_expires": "2027-01-18T11:20:38.000Z", "_created": "2026-10-10T11:15:49.000Z", "_published": "2026-10-10T11:20:41.959Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047577319", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 8 }, "_upstream": "https://github.com/bioc/crisprScoreData", "_commit": { "id": "9613c97523f93ce360a24eec685e8a8b845d4dd1", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379762 }, "_maintainer": { "name": "Jean-Philippe Fortin", "email": "fortin946@gmail.com", "login": "jfortin1", "bluesky": "@jp-fortin.bsky.social", "linkedin": "in/jean-philippe-fortin-98a68a47", "description": "Freelancer | Father of the @crisprVerse ", "uuid": 2328424 }, "_distro": "resolute", "_jobs": [ { "job": 114200817392, "time": 151, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11668596105" }, { "job": 114200817448, "time": 231, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11667828157" }, { "job": 114200817393, "time": 229, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11667828149" }, { "job": 114200158774, "time": 229, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667837678" } ], "_registered": true, "_dependencies": [ { "package": "ExperimentHub", "role": "Depends" }, { "package": "AnnotationHub", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 5, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.17.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.16.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimenthub", "homo_sapiens_data", "bioconductor", "bioconductor-package", "crispr", "crispr-analysis", "crispr-cas9", "crispr-design", "crispr-target", "grna", "grna-sequence", "grna-sequences", "scoring-models", "sgrna", "sgrna-design", "datapkg" ], "_stars": 2, "_contributors": [ { "user": "jfortin1", "count": 10, "uuid": 2328424 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "jwokaty", "count": 2, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/crisprverse/crisprscoredata", "_searchresults": 4, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/crisprScoreData.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "CRISPRa_model.pkl", "CRISPRi_model.pkl", "DeepWt_T7.hdf5", "DeepWt_U6.hdf5", "DeepWt.hdf5", "esp_rnn_model.hdf5", "hf_rnn_model.hdf5", "Model_weights.pkl", "RFcombined.rds" ], "_help": [ { "page": "crisprScoreData-package", "title": "Pretrained models for several crisprScore prediction algorithms", "topics": [ "crisprScoreData-package", "CRISPRa_model.pkl", "CRISPRi_model.pkl", "crisprScoreData", "DeepWt.hdf5", "DeepWt_T7.hdf5", "DeepWt_U6.hdf5", "esp_rnn_model.hdf5", "hf_rnn_model.hdf5", "Model_weights.pkl", "RFcombined.rds" ] } ], "_readme": "https://github.com/bioc/crisprScoreData/raw/RELEASE_3_23/README.md", "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "ExperimentHub", "fastmap", "filelock", "generics", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_vignettes": [ { "source": "crisprScoreData.Rmd", "filename": "crisprScoreData.html", "title": "crisprScoreData", "author": "Jean-Philippe Fortin", "engine": "knitr::rmarkdown", "headings": [ "Installation from Bioconductor", "Exploring the different data in crisprScoreData" ], "created": "2021-06-03 14:49:13", "modified": "2022-08-31 03:53:49", "commits": 6 } ], "_score": 5.778151250383644, "_indexed": false, "_nocasepkg": "crisprscoredata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/crisprScoreData", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.16.0", "date": "2026-10-10T11:18:55.000Z", "distro": "resolute", "commit": "9613c97523f93ce360a24eec685e8a8b845d4dd1", "fileid": "https://r2.ropensci.org/46e40f6906d592a4b85edbbfc146c865fafaf03fb4b87903f36dc72f1feac2c2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047577319" }, { "r": "4.6.1", "os": "linux", "version": "1.16.0", "date": "2026-10-10T11:18:55.000Z", "distro": "resolute", "commit": "9613c97523f93ce360a24eec685e8a8b845d4dd1", "fileid": "https://r2.ropensci.org/686d2a474d71d46daf1b21ffb16b72b3dcace0dd93a7c865de0f0b11377743a6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047577319" } ] }