{
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  "Package": "davidTiling",
  "Version": "1.52.0",
  "Title": "Data and analysis scripts for David, Huber et al. yeast tiling\narray paper",
  "Author": "Wolfgang Huber <huber@ebi.ac.uk>, Joern Toedling\n<toedling@ebi.ac.uk>",
  "Maintainer": "Wolfgang Huber <huber@ebi.ac.uk>",
  "Description": "This package contains the data for the paper by L. David\net al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix\ngenechips, an ExpressionSet object with the raw feature data, a\nprobe annotation data structure for the chip and the yeast\ngenome annotation (GFF file) that was used. In addition, some\ncustom-written analysis functions are provided, as well as R\nscripts in the scripts directory.",
  "biocViews": "ExperimentData, Genome, Saccharomyces_cerevisiae_Data,\nMicroarrayData, ReproducibleResearch",
  "Reference": "A high-resolution map of transcription in the yeast genome.\nDavid L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L,\nJones T, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2006\nApr 4;103(14):5320-5.",
  "License": "LGPL",
  "URL": "http://www.ebi.ac.uk/huber",
  "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:21:38 UTC",
  "RemoteUrl": "https://github.com/bioc/davidTiling",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "34b3c4ee510d3e98bdbdd2c75ce5cd14864ce583",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:00:15 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
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  "_sha256": "ba815cbcce4e4a5dc776fd8d3b75fbc5daef89d568d3a57b283e05f31514d98d",
  "_expires": "2027-01-18T11:08:14.000Z",
  "_created": "2026-10-10T11:00:15.000Z",
  "_published": "2026-10-10T11:08:16.807Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046670066",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 3,
    "warning": 1,
    "note": 12
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  "_upstream": "https://github.com/bioc/davidTiling",
  "_commit": {
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    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777378898
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  "_maintainer": {
    "name": "Wolfgang Huber",
    "email": "huber@ebi.ac.uk",
    "login": "wolfganghuber",
    "twitter": "@wolfgangkhuber",
    "description": "www.huber.embl.org",
    "uuid": 5198414
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  "_registered": true,
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    },
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      "package": "tilingArray",
      "role": "Depends"
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  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "week": "2025-44",
      "n": 2
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    "reproducibleresearch",
    "datapkg"
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    "type": "organization",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
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    "extra/manual.pdf"
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  "_cranurl": false,
  "_exports": [
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    "getAttributeField",
    "GOHyperG",
    "scatterWithHist",
    "showDens"
  ],
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    {
      "name": "gff",
      "title": "Genomic features of Saccharomyces cerevisiae",
      "object": "gff",
      "file": "gff.rda",
      "class": [
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      ],
      "fields": [
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        "source",
        "feature",
        "start",
        "end",
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      "name": "yeastFeatures",
      "title": "A data.frame with metadata about the features in SGD GFF files",
      "object": "yeastFeatures",
      "file": "yeastFeatures.rda",
      "class": [
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      ],
      "fields": [
        "isTranscribed"
      ],
      "rows": 25,
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  "_help": [
    {
      "page": "davidTiling",
      "title": "Dataset of class eSet with the raw 'CEL file' intensities",
      "topics": [
        "data:davidTiling",
        "davidTiling"
      ]
    },
    {
      "page": "gff",
      "title": "Genomic features of Saccharomyces cerevisiae",
      "topics": [
        "data:gff",
        "gff"
      ]
    },
    {
      "page": "probeAnno",
      "title": "An environment with probe mapping information for the Scerevisiae tiling array",
      "topics": [
        "data:probeAnno",
        "probeAnno"
      ]
    },
    {
      "page": "getGO",
      "title": "Get all GO categories for a list of genes.",
      "topics": [
        "getAllGO"
      ]
    },
    {
      "page": "getAttributeField",
      "title": "Extract the value of a certain field out of a character vector such as in the \"attributes\" column of a GFF table.",
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    },
    {
      "page": "GOHyperG",
      "title": "Hypergeometric test for GO category enrichment.",
      "topics": [
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    },
    {
      "page": "scatterWithHist",
      "title": "Scatterplot with histograms of marginal distributions",
      "topics": [
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    },
    {
      "page": "scoreSegments",
      "title": "Score segments",
      "topics": [
        "scoreSegments"
      ]
    },
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      "page": "showDens",
      "title": "Plot function for more than one density",
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  ],
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