{
  "_id": "6a1fde47b401979e73438ac4",
  "Package": "epivizrStandalone",
  "Title": "Run Epiviz Interactive Genomic Data Visualization App within R",
  "Version": "1.40.0",
  "Maintainer": "Hector Corrada Bravo <hcorrada@gmail.com>",
  "Author": "Hector Corrada Bravo, Jayaram Kancherla",
  "Description": "This package imports the epiviz visualization JavaScript\napp for genomic data interactive visualization. The\n'epivizrServer' package is used to provide a web server running\ncompletely within R. This standalone version allows to browse\narbitrary genomes through genome annotations provided by\nBioconductor packages.",
  "License": "MIT + file LICENSE",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "biocViews": "Visualization, Infrastructure, GUI",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "make libbz2-dev libgit2-dev liblzma-dev libpng-dev\nlibssh2-1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:33 UTC",
  "RemoteUrl": "https://github.com/bioc/epivizrStandalone",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
  "Packaged": {
    "Date": "2026-06-03 07:47:21 UTC",
    "User": "root"
  },
  "MD5sum": "3a8ebb147b8d5529d99c9493784b62a0",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "epivizrStandalone_1.40.0.tar.gz",
  "_fileid": "ae64d9f9400bf9e6dce9e2b20836d91c043dc07eecf3e22f9bb50d93bc6c38a7",
  "_filesize": 151563,
  "_sha256": "ae64d9f9400bf9e6dce9e2b20836d91c043dc07eecf3e22f9bb50d93bc6c38a7",
  "_created": "2026-06-03T07:47:21.000Z",
  "_published": "2026-06-03T07:56:55.270Z",
  "_jobs": [
    {
      "job": 79246431050,
      "time": 292,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7378735352"
    },
    {
      "job": 79246431195,
      "time": 510,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7378809533"
    },
    {
      "job": 79246431043,
      "time": 437,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7378784470"
    },
    {
      "job": 79246431231,
      "time": 390,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7378767473"
    },
    {
      "job": 79246431071,
      "time": 280,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7378731004"
    },
    {
      "job": 79245463339,
      "time": 370,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7378637341"
    },
    {
      "job": 79246431024,
      "time": 243,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7378719902"
    },
    {
      "job": 79246431039,
      "time": 386,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7378767250"
    },
    {
      "job": 79246431238,
      "time": 442,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7378786000"
    },
    {
      "job": 79246431214,
      "time": 399,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7378771243"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 11
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/epivizrStandalone",
  "_commit": {
    "id": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380213
  },
  "_maintainer": {
    "name": "Hector Corrada Bravo",
    "email": "hcorrada@gmail.com",
    "login": "hcorrada",
    "description": "",
    "uuid": 2072476
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.3",
      "role": "Depends"
    },
    {
      "package": "epivizr",
      "version": ">= 2.3.6",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "git2r",
      "role": "Imports"
    },
    {
      "package": "epivizrServer",
      "role": "Imports"
    },
    {
      "package": "Seqinfo",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "GenomicFeatures",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "OrganismDbi",
      "version": ">= 1.13.9",
      "role": "Suggests"
    },
    {
      "package": "Mus.musculus",
      "role": "Suggests"
    },
    {
      "package": "Biobase",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.41.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.40.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "visualization",
    "infrastructure",
    "gui"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 338,
    "source": "https://www.bioconductor.org/packages/stats/bioc/epivizrStandalone"
  },
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/epivizrStandalone.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "setStandalone",
    "startStandalone",
    "startStandaloneApp"
  ],
  "_help": [
    {
      "page": "setStandalone",
      "title": "Set settings for epiviz standalone repository.",
      "topics": [
        "setStandalone"
      ]
    },
    {
      "page": "startStandalone",
      "title": "Start a standalone 'epivizr' session.",
      "topics": [
        "startStandalone"
      ]
    },
    {
      "page": "startStandaloneApp",
      "title": "Start a standalone 'epivizr' session.",
      "topics": [
        "startStandaloneApp"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationFilter",
    "askpass",
    "BH",
    "Biobase",
    "BiocGenerics",
    "BiocIO",
    "BiocManager",
    "BiocParallel",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "bumphunter",
    "cachem",
    "cigarillo",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "DelayedArray",
    "digest",
    "doRNG",
    "ensembldb",
    "epivizr",
    "epivizrData",
    "epivizrServer",
    "fastmap",
    "foreach",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomeInfoDb",
    "GenomicAlignments",
    "GenomicFeatures",
    "GenomicRanges",
    "git2r",
    "glue",
    "graph",
    "httpuv",
    "httr",
    "IRanges",
    "iterators",
    "jsonlite",
    "KEGGREST",
    "lambda.r",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "limma",
    "locfit",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "OrganismDbi",
    "otel",
    "pkgconfig",
    "png",
    "promises",
    "ProtGenerics",
    "R6",
    "RBGL",
    "Rcpp",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "rngtools",
    "Rsamtools",
    "RSQLite",
    "rtracklayer",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "snow",
    "SparseArray",
    "statmod",
    "SummarizedExperiment",
    "sys",
    "UCSC.utils",
    "vctrs",
    "XML",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "EpivizrStandalone.Rmd",
      "filename": "EpivizrStandalone.html",
      "title": "Introduction to epivizrStandalone",
      "author": "Héctor Corrada Bravo",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Launch Epiviz Desktop App"
      ],
      "created": "2016-05-02 09:58:48",
      "modified": "2017-10-29 00:34:12",
      "commits": 11
    }
  ],
  "_score": 3.4771212547196626,
  "_indexed": false,
  "_nocasepkg": "epivizrstandalone",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/epivizrStandalone",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.40.0",
      "date": "2026-06-03T07:52:33.000Z",
      "distro": "noble",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "27fa7d07ee1d9f11b09368237d34b4602f1859242a79424f9525e932bdbd0fe0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.40.0",
      "date": "2026-06-03T07:52:03.000Z",
      "distro": "noble",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "e88947a3d24254a94b208cc96bdac01fdd5f34e43d1df9d3c2289c14724bd0ef",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.40.0",
      "date": "2026-06-03T07:50:59.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "d333ee7217e29d01c187042491ebcb3c41b936fcb43223a51184bc3754f38988",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.40.0",
      "date": "2026-06-03T07:50:13.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "964d5ab64b57234a182e11f424828ae04e4ad2c4d10280486a9b22d7196ee577",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.40.0",
      "date": "2026-06-03T07:52:03.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "ad65118b5925ca36795eb1207c647318f67f57bc0f0510869185a83869c579d3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-03T07:50:39.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "be74d3b12a2e36fdb5eb5aa1c0536fa5f58619706737900396c1fccc4253623b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-03T07:50:47.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "6e80709923259bf26975046d1625fa9f267703e478803a5eb04c77eee8c1ec3f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-03T07:50:41.000Z",
      "commit": "00afc9a211e3eb687e3d13b84d616d09e4facbf8",
      "fileid": "ed0ad2a57135ce8a4f06ffbce8d74764551b8aa513641927b789547756048cea",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870817597"
    }
  ]
}