{
  "_id": "6a34f1e43efcd9bda43d0827",
  "Package": "flowBin",
  "Type": "Package",
  "Title": "Combining multitube flow cytometry data by binning",
  "Version": "1.48.0",
  "Date": "2013-5-11",
  "Author": "Kieran O'Neill",
  "Maintainer": "Kieran O'Neill <koneill@bccrc.ca>",
  "Description": "Software to combine flow cytometry data that has been\nmultiplexed into multiple tubes with common markers between\nthem, by establishing common bins across tubes in terms of the\ncommon markers, then determining expression within each tube\nfor each bin in terms of the tube-specific markers.",
  "License": "Artistic-2.0",
  "LazyLoad": "yes",
  "biocViews": "ImmunoOncology, CellBasedAssays, FlowCytometry",
  "Collate": "'AllClasses.R' 'AllGenerics.R' 'BinnedFlowSample-accessors.R'\n'checkQNorm.R' 'flowBin.R' 'flowFPBin.R'\n'FlowSample-accessors.R' 'getBinExpr.R' 'kMeansBin.R'\n'mapClustersKNN.R' 'quantileNormalise.R' 'removeSparseBins.R'",
  "Config/pak/sysreqs": "libjpeg-dev libpng-dev libssl-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:38:30 UTC",
  "RemoteUrl": "https://github.com/bioc/flowBin",
  "RemoteRef": "RELEASE_3_23",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "MD5sum": "f220a3553e7cf28de5c88fb304845fe1",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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    "name": "Bioconductor",
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    "quantileNormalise",
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      "title": "Multitube AML sample as example data for flowBin",
      "object": "amlsample",
      "file": "amlsample.rda",
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      "table": false,
      "tojson": false
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      "page": "amlsample",
      "title": "Multitube AML sample as example data for flowBin",
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        "amlsample"
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    },
    {
      "page": "BinnedFlowSample",
      "title": "A 'FlowSample', but with binning information for each tube",
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        "bin.labels,BinnedFlowSample-method",
        "bin.labels<-",
        "bin.labels<-,BinnedFlowSample,list-method",
        "BinnedFlowSample",
        "BinnedFlowSample-class"
      ]
    },
    {
      "page": "checkQNorm",
      "title": "Function to check the quantile normalisation of a FlowSample using flowFP",
      "topics": [
        "checkQNorm",
        "checkQNorm,",
        "checkQNorm,FlowSample,FlowSample-method"
      ]
    },
    {
      "page": "eventsInBins",
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      "topics": [
        "eventsInBins",
        "eventsInBins,BinnedFlowSample-method"
      ]
    },
    {
      "page": "flowBin",
      "title": "function to run the entire flowBin pipeline",
      "topics": [
        "flowbin-package",
        "flowBin"
      ]
    },
    {
      "page": "flowFPBin",
      "title": "Bin sample using flowFP binning",
      "topics": [
        "flowFPBin",
        "flowFPBin,FlowSample-method"
      ]
    },
    {
      "page": "FlowSample",
      "title": "A class similar to flowSet, but with extra information needed by flowBin",
      "topics": [
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        "bin.pars,FlowSample-method",
        "bin.pars<-",
        "bin.pars<-,FlowSample,vector-method",
        "control.tubes",
        "control.tubes,FlowSample-method",
        "control.tubes<-",
        "control.tubes<-,FlowSample,vector-method",
        "FlowSample",
        "FlowSample-class",
        "measure.pars",
        "measure.pars,FlowSample-method",
        "measure.pars<-",
        "measure.pars<-,FlowSample,list-method",
        "name",
        "name,FlowSample-method",
        "name<-",
        "name<-,FlowSample,character-method",
        "show,FlowSample-method",
        "tube.set",
        "tube.set,FlowSample-method",
        "tube.set<-",
        "tube.set<-,FlowSample,list-method"
      ]
    },
    {
      "page": "getBinExpr",
      "title": "Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers",
      "topics": [
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        "getBinExpr,BinnedFlowSample-method"
      ]
    },
    {
      "page": "kMeansBin",
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      "topics": [
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        "kMeansBin,FlowSample-method"
      ]
    },
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      "page": "mapBinsKNN",
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      "topics": [
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        "mapBinsKNN,FlowSample-method"
      ]
    },
    {
      "page": "quantileNormalise",
      "title": "quantileNormalise normalise binning paramaters across all tubes of a flowSample",
      "topics": [
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        "quantileNormalise,FlowSample-method"
      ]
    },
    {
      "page": "removeSparseBins",
      "title": "Remove bins from a BinnedFlowSample with few events in them",
      "topics": [
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        "removeSparseBins,BinnedFlowSample-method"
      ]
    },
    {
      "page": "show-methods",
      "title": "Methods to view flowBin objects",
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        "show,CVResult-method",
        "show-methods"
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        "Introduction",
        "An example of constructing a flowExprSet de novo",
        "Looking a little more closly at the example data",
        "Quantile normalisation",
        "Running flowBin"
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      "created": "2013-12-19 23:25:31",
      "modified": "2014-06-26 21:18:49",
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