{ "_id": "6a1a7b9e1d7bb097a09d3a27", "Package": "flowCore", "Title": "flowCore: Basic structures for flow cytometry data", "Version": "2.24.0", "Authors@R": "c(person(\"B\",\"Ellis\", role = \"aut\"),\nperson(\"Perry\", \"Haaland\", role = \"aut\"),\nperson(\"Florian\", \"Hahne\", role = \"aut\"),\nperson(\"Nolwenn\", \"Le Meur\", role = \"aut\"),\nperson(\"Nishant\", \"Gopalakrishnan\", role = \"aut\"),\nperson(\"Josef\", \"Spidlen\", role = \"aut\"),\nperson(\"Mike\", \"Jiang\", role = c(\"aut\",\"cre\"), email = \"mike@ozette.com\"),\nperson(\"Greg\", \"Finak\", role = \"aut\"),\nperson(\"Samuel\",\"Granjeaud\", role = \"ctb\"))", "Maintainer": "Mike Jiang ", "Description": "Provides S4 data structures and basic functions to deal\nwith flow cytometry data.", "Collate": "AllGenerics.R AllClasses.R flowFrame-accessors.R\nflowSet-accessors.R transform_gate-methods.R coerce.R\nlogicalFilterResult-accessors.R summarizeFilter-methods.R\nfilterSummary-accessors.R manyFilterResult-accessors.R\nsummary-methods.R multipleFilterResult-accessors.R on-methods.R\ntransformList-accessors.R identifier-methods.R\nparameters-methods.R initialize-methods.R\nfilterResult-accessors.R in-methods.R rectangleGate-accessors.R\nfilterResultList-accessors.R IO.R show-methods.R\nlength-methods.R names-methods.R split-methods.R eval-methods.R\ngatingML.R FCSTransTransform.R median-logicle-transform.R\nutils.R flowCore.R GvHD.R CytoExploreR_wrappers.R cpp11.R", "License": "Artistic-2.0", "biocViews": "ImmunoOncology, Infrastructure, FlowCytometry,\nCellBasedAssays", "VignetteBuilder": "knitr", "SystemRequirements": "GNU make, C++17", "RoxygenNote": "7.2.3", "Encoding": "UTF-8", "Config/pak/sysreqs": "make", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:31:59 UTC", "RemoteUrl": "https://github.com/bioc/flowCore", "RemoteRef": "RELEASE_3_23", "RemoteSha": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 05:19:58 UTC", "User": "root" }, "Author": "B Ellis [aut],\nPerry Haaland [aut],\nFlorian Hahne [aut],\nNolwenn Le Meur [aut],\nNishant Gopalakrishnan [aut],\nJosef Spidlen [aut],\nMike Jiang [aut, cre],\nGreg Finak [aut],\nSamuel Granjeaud [ctb]", "MD5sum": "37dc1d5d87a6a1faa1776d2199b0f4a0", "_user": "bioc-release", "_type": "src", "_file": "flowCore_2.24.0.tar.gz", "_fileid": "014bb4de588147b66b7ed74dc231496c4e64b13d181487cf90521f091c8f30bf", "_filesize": 8472969, "_sha256": "014bb4de588147b66b7ed74dc231496c4e64b13d181487cf90521f091c8f30bf", "_created": "2026-05-30T05:19:58.000Z", "_published": "2026-05-30T05:54:38.056Z", "_jobs": [ { "job": 78626492859, "time": 212, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7305671362" }, { "job": 78626492926, "time": 262, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7305666975" }, { "job": 78626492919, "time": 361, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7305687278" }, { "job": 78626492929, "time": 248, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7305665743" }, { "job": 78626492933, "time": 326, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7305683421" }, { "job": 78626492927, "time": 173, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7305823709" }, { "job": 78626492923, "time": 444, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7305855243" }, { "job": 78626492932, "time": 251, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7305831784" }, { "job": 78626492906, "time": 464, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7305852882" }, { "job": 78626159247, "time": 355, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7305639684" }, { "job": 78626492844, "time": 170, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78626492878, "time": 294, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7305679038" }, { "job": 78626492901, "time": 245, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7305674348" }, { "job": 78626492861, "time": 331, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7305681624" } ], "_bioccheck": { "error": 0, "warning": 5, "note": 21 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/flowCore", "_commit": { "id": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379519 }, "_maintainer": { "name": "Mike Jiang", "email": "mike@ozette.com", "login": "mikejiang", "description": "", "uuid": 1385649 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "cpp11", "role": "LinkingTo" }, { "package": "BH", "version": ">= 1.81.0.0", "role": "LinkingTo" }, { "package": "cytolib", "role": "LinkingTo" }, { "package": "RProtoBufLib", "role": "LinkingTo" }, { "package": "Biobase", "role": "Imports" }, { "package": "BiocGenerics", "version": ">= 0.29.2", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats4", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "cytolib", "version": ">= 2.13.1", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "flowViz", "role": "Suggests" }, { "package": "flowStats", "version": ">= 3.43.4", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "flowWorkspace", "role": "Suggests" }, { "package": "flowWorkspaceData", "role": "Suggests" }, { "package": "openCyto", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "ggcyto", "role": "Suggests" }, { "package": "gridExtra", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 61, "_updates": [ { "week": "2026-01", "n": 3 }, { "week": "2026-08", "n": 2 }, { "week": "2026-11", "n": 1 }, { "week": "2026-16", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.25.0", "bioc": "3.24" }, { "branch": "release", "version": "2.24.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "infrastructure", "flowcytometry", "cellbasedassays", "curl", "openssl", "openblas", "cpp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 5814, "source": "https://www.bioconductor.org/packages/stats/bioc/flowCore" }, "_mentions": 109, "_searchresults": 1904, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/flowCore.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "%&%", "%in%", "%on%", "%subset%", "arcsinhTransform", "asinht", "asinhtGml2", "biexponentialTransform", "boundaryFilter", "cbind2", "char2ExpressionFilter", "cleanup", "collapse_desc", "colnames", "colnames<-", "compensate", "compensatedParameter", "compensation", "CytoExploreR_.estimateLogicle", "decompensate", "description", "description<-", "dg1polynomial", "each_col", "each_row", "EHtrans", "ellipsoidGate", "estimateLogicle", "estimateMedianLogicle", "eval", "exponential", "expressionFilter", "exprs", "exprs<-", "FCSTransTransform", "featureNames", "filter", "filterDetails", "filterDetails<-", "filterList", "filterReference", "filters", "filtersList", "flowFrame", "flowSet", "flowSet_to_list", "fr_append_cols", "fsApply", "getChannelMarker", "getIndexSort", "head", "hyperlog", "hyperlogtGml2", "identifier", "identifier<-", "initialize", "inverseLogicleTransform", "invsplitscale", "isFCSfile", "keyword", "keyword<-", "kmeansFilter", "linearTransform", "lintGml2", "lnTransform", "logarithm", "logicletGml2", "logicleTransform", "logtGml2", "logTransform", "manyFilterResult", "markernames", "markernames<-", "multiRangeGate", "ncol", "normalization", "normalize", "nrow", "parameters", "parameters<-", "pData", "pData<-", "phenoData", "phenoData<-", "plot", "polygonGate", "polytopeGate", "print", "quadGate", "quadratic", "quadraticTransform", "ratio", "ratiotGml2", "rbind2", "read.FCS", "read.FCSheader", "read.flowSet", "rectangleGate", "rotate_gate", "sampleFilter", "sampleNames", "sampleNames<-", "scale_gate", "scaleTransform", "shift_gate", "show", "sinht", "spillover", "split", "splitscale", "splitScaleTransform", "squareroot", "Subset", "summarizeFilter", "summary", "tail", "timeFilter", "toTable", "transform", "transform_gate", "transformList", "transformReference", "truncateTransform", "unitytransform", "varLabels", "varLabels<-", "varMetadata", "varMetadata<-", "write.FCS", "write.flowSet" ], "_datasets": [ { "name": "GvHD", "title": "Extract of a Graft versus Host Disease monitoring experiment (Rizzieri et al., 2007)", "object": "GvHD", "file": "GvHD.rda", "class": [ "flowSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "flowCore-package", "title": "flowCore: Basic structures for flow cytometry data", "topics": [ "flowCore-package", "flowCore" ] }, { "page": "arcsinhTransform", "title": "Create the definition of an arcsinh transformation function (base specified by user) to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "arcsinhTransform" ] }, { "page": "asinht-class", "title": "Class \"asinht\"", "concept": [ "mathematical transform classes" ], "topics": [ "asinht", "asinht-class", "eval,asinht,missing-method" ] }, { "page": "asinhtGml2-class", "title": "Class asinhtGml2", "concept": [ "mathematical transform classes" ], "topics": [ "asinhtGml2", "asinhtGml2-class", "eval,asinhtGml2,missing-method" ] }, { "page": "biexponentialTransform", "title": "Compute a transform using the 'biexponential' function", "concept": [ "Transform functions" ], "topics": [ "biexponentialTransform" ] }, { "page": "boundaryFilter-class", "title": "Class \"boundaryFilter\"", "topics": [ "boundaryFilter", "boundaryFilter-class", "show,boundaryFilter-method" ] }, { "page": "characterOrNumeric-class", "title": "Class \"characterOrNumeric\"", "topics": [ "characterOrNumeric", "characterOrNumeric-class" ] }, { "page": "characterOrParameters-class", "title": "Class \"characterOrParameters\"", "topics": [ "characterOrParameters", "characterOrParameters-class" ] }, { "page": "characterOrTransformation-class", "title": "Class \"characterOrTransformation\"", "topics": [ "characterOrTransformation", "characterOrTransformation-class" ] }, { "page": "checkOffset", "title": "Fix the offset when its values recorded in header and TEXT don't agree", "topics": [ "checkOffset" ] }, { "page": "coerce", "title": "Convert an object to another class", "topics": [ "coerce", "coerce,call,filter-method", "coerce,character,filter-method", "coerce,complementFilter,call-method", "coerce,complementFilter,logical-method", "coerce,ellipsoidGate,polygonGate-method", "coerce,environment,flowSet-method", "coerce,factor,filterResult-method", "coerce,filter,call-method", "coerce,filter,logical-method", "coerce,filterReference,call-method", "coerce,filterReference,concreteFilter-method", "coerce,filterResult,logical-method", "coerce,filterResultList,list-method", "coerce,flowFrame,flowSet-method", "coerce,flowSet,flowFrame-method", "coerce,flowSet,list-method", "coerce,formula,filter-method", "coerce,intersectFiler,call-method", "coerce,intersectFilter,logical-method", "coerce,list,filterResultList-method", "coerce,list,flowSet-method", "coerce,list,transformList-method", "coerce,logical,filterResult-method", "coerce,logicalFilterResult,logical-method", "coerce,matrix,filterResult-method", "coerce,name,filter-method", "coerce,nullParameter,character-method", "coerce,numeric,filterResult-method", "coerce,parameters,character-method", "coerce,randomFilterResult,logical-method", "coerce,ratio,character-method", "coerce,rectangleGate,polygonGate-method", "coerce,subsetFilter,call-method", "coerce,subsetFilter,logical-method", "coerce,transform,character-method", "coerce,unionFilter,call-method", "coerce,unionFilter,logical-method", "coerce,unitytransform,character-method" ] }, { "page": "collapse_desc", "title": "Coerce the list of the keywords into a character Also flatten spillover matrix into a string", "topics": [ "collapse_desc" ] }, { "page": "compensatedParameter-class", "title": "Class \"compensatedParameter\"", "topics": [ "compensatedParameter", "compensatedParameter-class", "eval,compensatedParameter,missing-method" ] }, { "page": "compensation-class", "title": "Class \"compensation\"", "topics": [ "compensate", "compensation", "compensation-class", "identifier,compensation-method", "identifier<-,compensation,character-method", "parameters,compensation-method", "show,compensation-method" ] }, { "page": "complementFilter-class", "title": "Class complementFilter", "concept": [ "setOperationFilter classes" ], "topics": [ "complementFilter", "complementFilter-class", "show,complementFilter-method" ] }, { "page": "concreteFilter-class", "title": "Class \"concreteFilter\"", "topics": [ "concreteFilter", "concreteFilter-class" ] }, { "page": "decompensate", "title": "Decompensate a flowFrame", "topics": [ "decompensate", "decompensate,flowFrame,compensation-method", "decompensate,flowFrame,data.frame-method", "decompensate,flowFrame,matrix-method", "decompensate-methods" ] }, { "page": "dg1polynomial-class", "title": "Class \"dg1polynomial\"", "concept": [ "mathematical transform classes" ], "topics": [ "dg1polynomial", "dg1polynomial-class", "eval,dg1polynomial,missing-method", "initialize,dg1polynomial-method", "parameters<-,dg1polynomial,character-method", "parameters<-,dg1polynomial,parameters-method" ] }, { "page": "each_col", "title": "Methods to apply functions over flowFrame margins", "topics": [ "each_col", "each_col,flowFrame-method", "each_col-methods", "each_row", "each_row,flowFrame-method", "each_row-methods" ] }, { "page": "EHtrans-class", "title": "Class \"EHtrans\"", "concept": [ "mathematical transform classes" ], "topics": [ "EHtrans", "EHtrans-class", "eval,EHtrans,missing-method" ] }, { "page": "ellipsoidGate-class", "title": "Class \"ellipsoidGate\"", "concept": [ "Gate classes" ], "topics": [ "ellipsoidGate", "ellipsoidGate-class", "show,ellipsoidGate-method" ] }, { "page": "estimateMedianLogicle", "title": "Estimates a common logicle transformation for a flowSet.", "topics": [ "estimateMedianLogicle" ] }, { "page": "exponential-class", "title": "Class \"exponential\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,exponential,missing-method", "exponential", "exponential-class" ] }, { "page": "expressionFilter-class", "title": "Class \"expressionFilter\"", "topics": [ "char2ExpressionFilter", "expressionFilter", "expressionFilter-class", "show,expressionFilter-method" ] }, { "page": "FCSTransTransform", "title": "Computes a transform using the 'iplogicle' function", "topics": [ "FCSTransTransform" ] }, { "page": "filter-and-methods", "title": "Take the intersection of two filters", "topics": [ "%&%", "%&%,ANY-method", "%&%,filter,filter-method", "%&%-methods", "%subset%", "%subset%,ANY-method", "%subset%,filter,filter-method", "%subset%,list,filter-method", "&,filter,filter-method", "&,filter,list-method", "&,list,filter-method", "coerce,intersectFilter,call-method", "filter-and-methods", "intersectFilter-method", "subsetFilter-method" ] }, { "page": "filter-class", "title": "A class for representing filtering operations to be applied to flow data.", "topics": [ "!,filter-method", "booleanGate,filter-class", "decisionTreeGate,filter-class", "ellipsoidGate,filter-class", "filter,filter-method", "filter-class", "filtergate,filter-class", "norm2Filter,filter-class", "polygonGate,filter-class", "rectangleGate,filter-class", "|,filter,filter-method", "|,filter,list-method", "|,list,filter-method" ] }, { "page": "filter-in-methods", "title": "Filter-specific membership methods", "topics": [ "%in%", "%in%,ANY,filterReference-method", "%in%,ANY,filterResult-method", "%in%,ANY,manyFilterResult-method", "%in%,ANY,multipleFilterResult-method", "%in%,flowFrame,boundaryFilter-method", "%in%,flowFrame,complementFilter-method", "%in%,flowFrame,ellipsoidGate-method", "%in%,flowFrame,expressionFilter-method", "%in%,flowFrame,filterResult-method", "%in%,flowFrame,intersectFilter-method", "%in%,flowFrame,kmeansFilter-method", "%in%,flowFrame,norm2Filter-method", "%in%,flowFrame,polygonGate-method", "%in%,flowFrame,polytopeGate-method", "%in%,flowFrame,quadGate-method", "%in%,flowFrame,rectangleGate-method", "%in%,flowFrame,sampleFilter-method", "%in%,flowFrame,subsetFilter-method", "%in%,flowFrame,timeFilter-method", "%in%,flowFrame,transformFilter-method", "%in%,flowFrame,unionFilter-method", "%in%-methods", "filter-in-methods" ] }, { "page": "filter-methods", "title": "Filter FCS files", "topics": [ "call,filter-method", "character,filter-method", "filter", "filter,flowFrame,filter-method", "filter,flowFrame,norm2Filter", "filter,flowFrame,polygonGate", "filter,flowFrame,rectangleGate", "filter,flowFrame-method", "filter,flowSet,filter-method", "filter,flowSet,filterList-method", "filter,flowSet,list-method", "filter-method", "filter-methods", "formula,filter-method", "identifier<-,filter,character-method", "length,filter-method", "name,filter-method", "show,filter-method", "summary,filter-method" ] }, { "page": "filter-on-methods", "title": "Methods for Function %on% in Package `flowCore'", "topics": [ "%on%", "%on%,ANY,flowSet-method", "%on%,filter,parameterTransform-method", "%on%,filter,transform-method", "%on%,filter,transformList-method", "%on%,parameterTransform,flowFrame-method", "%on%,transform,flowFrame-method", "%on%,transformList,flowFrame-method", "%on%,transformList,flowSet-method", "%on%-methods", "filter-on-methods" ] }, { "page": "filterDetails-methods", "title": "Obtain details about a filter operation", "topics": [ "filterDetails", "filterDetails,filterResult,ANY-method", "filterDetails,filterResult,missing-method", "filterDetails-methods", "filterDetails<-", "filterDetails<-,filterResult,character,ANY-method", "filterDetails<-,filterResult,character,filter-method", "filterDetails<-,filterResult,character,setOperationFilter-method" ] }, { "page": "filterList-class", "title": "Class \"filterList\"", "topics": [ "filterList", "filterList-class", "identifier,filterList-method", "identifier<-,filterList,character-method", "show,filterList-method" ] }, { "page": "filterReference-class", "title": "Class filterReference", "topics": [ "eval,filterReference,missing-method", "filterReference", "filterReference,environment,character-method", "filterReference-class", "length,filterReference-method", "show,filterReference-method", "summary,filterReference-method" ] }, { "page": "filterResult-class", "title": "Class \"filterResult\"", "topics": [ "==,filterResult,flowFrame-method", "filterResult", "filterResult-class", "show,filterResult-method", "[[,filterResult,ANY-method" ] }, { "page": "filterResultList-class", "title": "Class \"filterResultList\"", "topics": [ "filterResultList", "filterResultList-class", "names,filterResultList-method", "parameters,filterResultList-method", "show,filterResultList-method", "split,flowSet,filterResultList-method", "summary,filterResultList-method", "[,filterResultList,ANY-method", "[[,filterResultList,ANY-method" ] }, { "page": "filters-class", "title": "Class \"filters\" and \"filtersList\"", "topics": [ "filters", "filters-class", "filtersList", "filtersList-class", "show,filters-method", "show,filtersList-method" ] }, { "page": "filterSummary-class", "title": "Class \"filterSummary\"", "topics": [ "$,filterSummary-method", "coerce,filterSummary,data.frame-method", "filterSummary", "filterSummary-class", "length,filterSummary-method", "names,filterSummary-method", "print,filterSummary-method", "show,filterSummary-method", "summary,filterResult-method", "toTable", "toTable,filterSummary-method", "[[,filterSummary,character-method", "[[,filterSummary,numeric-method" ] }, { "page": "filterSummaryList-class", "title": "Class \"filterSummaryList\"", "topics": [ "filterSummaryList", "filterSummaryList-class", "toTable,filterSummaryList-method" ] }, { "page": "flowFrame-class", "title": "'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run", "topics": [ "$.flowFrame", "<,flowFrame,ANY-method", "<=,flowFrame,ANY-method", "==,flowFrame,filterResult-method", "==,flowFrame,flowFrame-method", ">,flowFrame,ANY-method", ">=,flowFrame,ANY-method", "cbind2,flowFrame,matrix-method", "cbind2,flowFrame,numeric-method", "colnames,flowFrame-method", "colnames<-", "colnames<-,flowFrame-method", "compensate,flowFrame,compensation-method", "compensate,flowFrame,data.frame-method", "compensate,flowFrame,matrix-method", "description", "description,flowFrame-method", "description<-,flowFrame,ANY-method", "description<-,flowFrame,list-method", "dim", "dim,flowFrame-method", "exprs", "exprs,flowFrame-method", "exprs<-", "exprs<-,flowFrame,ANY-method", "exprs<-,flowFrame,matrix-method", "featureNames", "featureNames,flowFrame-method", "flowFrame", "flowFrame-class", "head,flowFrame-method", "initialize,flowFrame-method", "names", "names,flowFrame-method", "ncol,flowFrame-method", "nrow,flowFrame-method", "plot,flowFrame,ANY-method", "plot,flowFrame-method", "range", "range,flowFrame-method", "show,flowFrame-method", "spillover", "spillover,flowFrame-method", "summary,flowFrame-method", "tail,flowFrame-method", "[,flowFrame,ANY-method", "[,flowFrame,filter-method", "[,flowFrame,filterResult-method" ] }, { "page": "flowSet_to_list", "title": "Convert a flowSet to a list of flowFrames", "topics": [ "flowSet_to_list" ] }, { "page": "flowSet-class", "title": "'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays", "topics": [ "$,flowSet-method", "colnames,flowSet-method", "colnames<-,flowSet-method", "compensate,flowSet,ANY-method", "compensate,flowSet,data.frame-method", "compensate,flowSet,list-method", "flowSet", "flowSet-class", "fsApply,flowSet-method", "identifier,flowSet-method", "identifier<-,flowSet,ANY-method", "length,flowSet-method", "pData,flowSet-method", "pData<-,flowSet,data.frame-method", "phenoData,flowSet-method", "phenoData<-,flowSet,ANY-method", "phenoData<-,flowSet,phenoData-method", "plot,flowSet,ANY-method", "plot,flowSet-method", "rbind2,flowFrame,flowSet-method", "rbind2,flowSet,flowFrame-method", "rbind2,flowSet,flowSet,missing-method", "rbind2,flowSet,flowSet-method", "rbind2,flowSet,missing", "rbind2,flowSet,missing-method", "sampleNames,flowSet-method", "sampleNames<-,flowSet,ANY-method", "show,flowSet-method", "summary,flowSet-method", "varLabels,flowSet-method", "varLabels<-,flowSet,ANY-method", "varLabels<-,flowSet-method", "varMetadata,flowSet-method", "varMetadata<-,flowSet,ANY-method", "[,flowSet,ANY-method", "[,flowSet-method", "[[,flowSet,ANY-method", "[[,flowSet-method", "[[<-,flowFrame-method", "[[<-,flowSet,ANY,ANY,flowFrame-method", "[[<-,flowSet-method" ] }, { "page": "fr_append_cols", "title": "Append data columns to a flowFrame", "topics": [ "fr_append_cols" ] }, { "page": "fsApply", "title": "Apply a Function over values in a flowSet", "topics": [ "fsApply", "fsApply,flowSet,ANY" ] }, { "page": "getChannelMarker", "title": "get channel and marker information from a 'flowFrame' that matches to the given keyword", "topics": [ "getChannelMarker" ] }, { "page": "getIndexSort", "title": "Extract Index Sorted Data from an FCS File", "topics": [ "getIndexSort", "getIndexSort,flowFrame-method", "getIndexSort-methods" ] }, { "page": "GvHD", "title": "Extract of a Graft versus Host Disease monitoring experiment (Rizzieri et al., 2007)", "topics": [ "GvHD" ] }, { "page": "hyperlog-class", "title": "Class \"hyperlog\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,hyperlog,missing-method", "hyperlog", "hyperlog-class" ] }, { "page": "hyperlogtGml2-class", "title": "Class hyperlogtGml2", "concept": [ "mathematical transform classes" ], "topics": [ "eval,hyperlogtGml2,missing-method", "hyperlogtGml2", "hyperlogtGml2-class" ] }, { "page": "identifier-methods", "title": "Retrieve the GUID of flowCore objects", "topics": [ "identifier", "identifier,filter-method", "identifier,filterReference-method", "identifier,filterResult-method", "identifier,flowFrame-method", "identifier,NULL-method", "identifier,transform-method", "identifier-methods", "identifier<-", "identifier<-,flowFrame,ANY-method", "identifier<-,flowFrame-method" ] }, { "page": "intersectFilter-class", "title": "Class intersectFilter", "concept": [ "setOperationFilter classes" ], "topics": [ "intersectFilter", "intersectFilter-class", "show,intersectFilter-method" ] }, { "page": "inverseLogicleTransform", "title": "Computes the inverse of the transform defined by the 'logicleTransform' function or the transformList generated by 'estimateLogicle' function", "concept": [ "Transform functions" ], "topics": [ "inverseLogicleTransform" ] }, { "page": "invsplitscale-class", "title": "Class \"invsplitscale\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,invsplitscale,missing-method", "invsplitscale", "invsplitscale-class" ] }, { "page": "keyword-methods", "title": "Methods to retrieve keywords of a flowFrame", "topics": [ "keyword", "keyword,flowFrame,character-method", "keyword,flowFrame,function-method", "keyword,flowFrame,list-method", "keyword,flowFrame,missing-method", "keyword,flowSet,ANY-method", "keyword,flowSet,list-method", "keyword-methods", "keyword<-", "keyword<-,flowFrame,ANY-method", "keyword<-,flowFrame,character-method", "keyword<-,flowFrame,list-method", "keyword<-,flowSet,list-method" ] }, { "page": "kmeansFilter-class", "title": "Class \"kmeansFilter\"", "topics": [ "kmeansFilter", "kmeansFilter-class", "length,kmeansFilter-method", "show,kmeansFilter-method" ] }, { "page": "linearTransform", "title": "Create the definition of a linear transformation function to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "linearTransform" ] }, { "page": "lintGml2-class", "title": "Class lintGml2", "concept": [ "mathematical transform classes" ], "topics": [ "eval,lintGml2,missing-method", "lintGml2", "lintGml2-class" ] }, { "page": "lnTransform", "title": "Create the definition of a ln transformation function (natural logarthim) to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "lnTransform" ] }, { "page": "logarithm-class", "title": "Class \"logarithm\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,logarithm,missing-method", "logarithm", "logarithm-class" ] }, { "page": "logicalFilterResult-class", "title": "Class \"logicalFilterResult\"", "topics": [ "length,logicalFilterResult-method", "logicalFilterResult", "logicalFilterResult-class", "names,logicalFilterResult-method", "summary,logicalFilterResult-method", "[[,logicalFilterResult,ANY-method" ] }, { "page": "logicletGml2-class", "title": "Class logicletGml2", "concept": [ "mathematical transform classes" ], "topics": [ "eval,logicletGml2,missing-method", "logicletGml2", "logicletGml2-class" ] }, { "page": "logicleTransform", "title": "Computes a transform using the 'logicle_transform' function", "concept": [ "Transform functions" ], "topics": [ "estimateLogicle", "logicleTransform" ] }, { "page": "logtGml2-class", "title": "Class logtGml2", "concept": [ "mathematical transform classes" ], "topics": [ "eval,logtGml2,missing-method", "logtGml2", "logtGml2-class" ] }, { "page": "logTransform", "title": "Create the definition of a log transformation function (base specified by user) to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "logTransform" ] }, { "page": "manyFilterResult-class", "title": "Class \"manyFilterResult\"", "topics": [ "as.data.frame.manyFilterResult", "length,manyFilterResult-method", "manyFilterResult", "manyFilterResult-class", "names,manyFilterResult-method", "parameters,manyFilterResult-method", "show,manyFilterResult-method", "summary,manyFilterResult-method", "[[,manyFilterResult,ANY-method", "[[,manyFilterResult-method" ] }, { "page": "markernames", "title": "get or update the marker names", "topics": [ "markernames", "markernames,flowFrame-method", "markernames,flowSet-method", "markernames<-", "markernames<-,flowFrame-method", "markernames<-,flowSet-method" ] }, { "page": "multipleFilterResult-class", "title": "Class \"multipleFilterResult\"", "topics": [ "length,multipleFilterResult-method", "multipleFilterResult", "multipleFilterResult-class", "names,multipleFilterResult-method", "names<-,multipleFilterResult,ANY-method", "names<-,multipleFilterResult-method", "show,multipleFilterResult-method", "summary,multipleFilterResult-method", "[,multipleFilterResult,ANY-method", "[[,multipleFilterResult,ANY-method", "[[,multipleFilterResult-method" ] }, { "page": "normalization-class", "title": "Class \"normalization\"", "topics": [ "identifier,normalization-method", "identifier<-,normalization,character-method", "normalization", "normalization-class", "normalize", "normalize,flowSet,normalization-method", "parameters,normalization-method" ] }, { "page": "nullParameter-class", "title": "Class \"nullParameter\"", "topics": [ "nullParameter", "nullParameter-class" ] }, { "page": "parameterFilter-class", "title": "Class \"parameterFilter\"", "topics": [ "initialize,parameterFilter-method", "parameterFilter-class" ] }, { "page": "parameters-class", "title": "Class \"parameters\"", "topics": [ "parameters-class" ] }, { "page": "parameters-methods", "title": "Obtain information about parameters for flow cytometry objects.", "topics": [ "parameters", "parameters,filter-method", "parameters,filterReference-method", "parameters,filterResult-method", "parameters,flowFrame,missing-method", "parameters,flowFrame-method", "parameters,nullParameter-method", "parameters,parameterFilter-method", "parameters,parameterTransform-method", "parameters,ratio-method", "parameters,setOperationFilter-method", "parameters,transform-method", "parameters-methods", "parameters<-", "parameters<-,dg1polynomial,transform-method", "parameters<-,flowFrame,AnnotatedDataFrame-method", "parameters<-,parameterFilter,character-method", "parameters<-,parameterFilter,list-method", "parameters<-,parameterFilter,transform-method", "parameters<-,singleParameterTransform,character-method", "parameters<-,singleParameterTransform,transform-method" ] }, { "page": "parameterTransform-class", "title": "Class \"parameterTransform\"", "topics": [ "parameterTransform", "parameterTransform-class" ] }, { "page": "polygonGate-class", "title": "Class \"polygonGate\"", "concept": [ "Gate classes" ], "topics": [ "polygonGate", "polygonGate-class", "show,polygonGate-method" ] }, { "page": "polytopeGate-class", "title": "Define filter boundaries", "concept": [ "Gate classes" ], "topics": [ "polytopeGate", "polytopeGate-class", "show,polytopeGate-method" ] }, { "page": "quadGate-class", "title": "Class \"quadGate\"", "concept": [ "Gate classes" ], "topics": [ "quadGate", "quadGate-class", "show,quadGate-method" ] }, { "page": "quadratic-class", "title": "Class \"quadratic\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,quadratic,missing-method", "quadratic", "quadratic-class" ] }, { "page": "quadraticTransform", "title": "Create the definition of a quadratic transformation function to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "quadraticTransform" ] }, { "page": "randomFilterResult-class", "title": "Class \"randomFilterResult\"", "topics": [ "randomFilterResult", "randomFilterResult-class" ] }, { "page": "ratio-class", "title": "Class \"ratio\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,ratio,missing-method", "initialize,ratio-method", "ratio", "ratio-class" ] }, { "page": "ratiotGml2-class", "title": "Class \"ratiotGml2\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,ratiotGml2,missing-method", "initialize,ratiotGml2-method", "parameters,ratiotGml2-method", "ratiotGml2", "ratiotGml2-class" ] }, { "page": "read.FCS", "title": "Read an FCS file", "topics": [ "cleanup", "isFCSfile", "read.FCS" ] }, { "page": "read.FCSheader", "title": "Read the TEXT section of a FCS file", "topics": [ "read.FCSheader" ] }, { "page": "read.flowSet", "title": "Read a set of FCS files", "topics": [ "read.flowSet" ] }, { "page": "rectangleGate-class", "title": "Class \"rectangleGate\"", "concept": [ "Gate classes" ], "topics": [ "*,rectangleGate,rectangleGate-method", "rectangleGate", "rectangleGate-class", "show,rectangleGate-method", "summary,rectangleGate-method", "[,rectangleGate,ANY-method", "[,rectangleGate,character-method" ] }, { "page": "rotate_gate", "title": "Simplified geometric rotation of gates", "topics": [ "rotate_gate", "rotate_gate.default" ] }, { "page": "sampleFilter-class", "title": "Class \"sampleFilter\"", "topics": [ "sampleFilter", "sampleFilter-class", "show,sampleFilter-method" ] }, { "page": "scale_gate", "title": "Simplified geometric scaling of gates", "topics": [ "scale_gate", "scale_gate.default" ] }, { "page": "scaleTransform", "title": "Create the definition of a scale transformation function to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "scaleTransform" ] }, { "page": "setOperationFilter-class", "title": "Class \"setOperationFilter\"", "concept": [ "setOperationFilter classes" ], "topics": [ "setOperationFilter", "setOperationFilter-class" ] }, { "page": "shift_gate", "title": "Simplified geometric translation of gates", "topics": [ "shift_gate", "shift_gate.default" ] }, { "page": "singleParameterTransform-class", "title": "Class \"singleParameterTransform\"", "topics": [ "initialize,singleParameterTransform-method", "parameters,singleParameterTransform-method", "singleParameterTransform-class" ] }, { "page": "sinht-class", "title": "Class \"sinht\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,sinht,missing-method", "sinht", "sinht-class" ] }, { "page": "split-methods", "title": "Methods to split flowFrames and flowSets according to filters", "topics": [ "split", "split,flowFrame,ANY-method", "split,flowFrame,character-method", "split,flowFrame,factor-method", "split,flowFrame,filter-method", "split,flowFrame,logicalFilterResult-method", "split,flowFrame,manyFilterResult-method", "split,flowFrame,multipleFilterResult-method", "split,flowFrame,numeric-method", "split,flowSet,ANY-method", "split,flowSet,character-method", "split,flowSet,factor-method", "split,flowSet,filter-method", "split,flowSet,filterResult-method", "split,flowSet,list-method", "split,flowSet,numeric-method", "split-methods" ] }, { "page": "splitscale-class", "title": "Class \"splitscale\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,splitscale,missing-method", "splitscale", "splitscale-class" ] }, { "page": "splitScaleTransform", "title": "Compute the split-scale transformation describe by FL. Battye", "concept": [ "Transform functions" ], "topics": [ "splitScaleTransform" ] }, { "page": "squareroot-class", "title": "Class \"squareroot\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,squareroot,missing-method", "squareroot", "squareroot-class" ] }, { "page": "Subset-methods", "title": "Subset a flowFrame or a flowSet", "topics": [ "Subset", "Subset,flowFrame,filter-method", "Subset,flowFrame,logical-method", "Subset,flowFrame-method", "Subset,flowSet,ANY", "Subset,flowSet,ANY-method", "Subset,flowSet,filterResultList-method", "Subset,flowSet,list-method", "Subset-methods" ] }, { "page": "subsetFilter-class", "title": "Class subsetFilter", "concept": [ "setOperationFilter classes" ], "topics": [ "show,subsetFilter-method", "subsetFilter", "subsetFilter-class", "summary,subsetFilter-method" ] }, { "page": "summarizeFilter-methods", "title": "Methods for function summarizeFilter", "topics": [ "summarizeFilter", "summarizeFilter,filterResult,filter-method", "summarizeFilter,filterResult,filterReference-method", "summarizeFilter,filterResult,parameterFilter-method", "summarizeFilter,filterResult,subsetFilter-method", "summarizeFilter,logicalFilterResult,norm2Filter-method", "summarizeFilter,logicalFilterResult,parameterFilter-method", "summarizeFilter,multipleFilterResult,parameterFilter-method", "summarizeFilter-methods" ] }, { "page": "timeFilter-class", "title": "Class \"timeFilter\"", "topics": [ "show,timeFilter-method", "timeFilter", "timeFilter-class" ] }, { "page": "transform", "title": "Transform a flowFrame or flowSet", "topics": [ "transform", "transform,flowFrame-method", "transform,flowSet-method" ] }, { "page": "transform_gate", "title": "Simplified geometric transformation of gates", "topics": [ "transform_gate", "transform_gate.default" ] }, { "page": "transform-class", "title": "'transform': a class for transforming flow-cytometry data by applying scale factors.", "topics": [ "show,transform-method", "summary,transform-method", "transform,missing-method", "transform-class" ] }, { "page": "transformation-class", "title": "Class \"transformation\"", "topics": [ "transformation", "transformation-class" ] }, { "page": "transformFilter-class", "title": "A class for encapsulating a filter to be performed on transformed parameters", "topics": [ "show,transformFilter-method", "transformFilter", "transformFilter-class" ] }, { "page": "transformList-class", "title": "Class \"transformList\"", "topics": [ "c,transformList-method", "colnames,transformList-method", "identifier,transformList-method", "identifier<-,transformList,character-method", "transformList", "transformList-class" ] }, { "page": "transformMap-class", "title": "A class for mapping transforms between parameters", "topics": [ "show,transformMap-method", "transformMap", "transformMap-class" ] }, { "page": "transformReference-class", "title": "Class \"transformReference\"", "topics": [ "eval,transformReference,missing-method", "parameters,transformReference-method", "transformReference", "transformReference-class" ] }, { "page": "truncateTransform", "title": "Create the definition of a truncate transformation function to be applied on a data set", "concept": [ "Transform functions" ], "topics": [ "truncateTransform" ] }, { "page": "unionFilter-class", "title": "Class unionFilter", "concept": [ "setOperationFilter classes" ], "topics": [ "show,unionFilter-method", "unionFilter", "unionFilter-class" ] }, { "page": "unitytransform-class", "title": "Class \"unitytransform\"", "concept": [ "mathematical transform classes" ], "topics": [ "eval,unitytransform,missing-method", "show,unitytransform-method", "unitytransform", "unitytransform-class" ] }, { "page": "updateTransformKeywords", "title": "modify description to reflect the transformation Involve inserting/updating 'transformation' and flowCore_$PnRmax keywords", "topics": [ "updateTransformKeywords" ] }, { "page": "validFilters", "title": "Check if all filters in a filters matches same paramters", "topics": [ "validFilters" ] }, { "page": "write.FCS", "title": "Write an FCS file", "topics": [ "write.FCS" ] }, { "page": "write.flowSet", "title": "Write an FCS file", "topics": [ "write.flowSet" ] } ], "_readme": "https://github.com/bioc/flowCore/raw/RELEASE_3_23/README.md", "_rundeps": [ "BH", "Biobase", "BiocGenerics", "biocmake", "cpp11", "cytolib", "dir.expiry", "filelock", "generics", "matrixStats", "Rcpp", "Rhdf5lib", "RProtoBufLib", "S4Vectors" ], "_sysdeps": [ { "shlib": "libcurl", "package": "libcurl4t64", "headers": "libcurl4-openssl-dev", "source": "curl", "version": "8.5.0-2ubuntu10.9", "name": "curl", "homepage": "https://curl.se/", "description": "easy-to-use client-side URL transfer library (OpenSSL flavour)" }, { "shlib": "libcrypto", "package": "libssl3t64", "headers": "libssl-dev", "source": "openssl", "version": "3.0.13-0ubuntu3.9", "name": "openssl", "homepage": "https://www.openssl.org/", "description": "Secure Sockets Layer toolkit - shared libraries" }, { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "HowTo-flowCore.Rnw", "filename": "HowTo-flowCore.pdf", "title": "Basic Functions for Flow Cytometry Data", "engine": "knitr::knitr", "headings": [], "created": "2014-04-16 17:52:44", "modified": "2021-01-23 02:31:01", "commits": 18 } ], "_score": 10.704533069885331, "_indexed": false, "_nocasepkg": "flowcore", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/flowCore", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.24.0", "date": "2026-05-30T05:23:29.000Z", "distro": "noble", "arch": "aarch64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "ba58e9f49ca0873fdbf3f52e9792ece887b7ec00208b77a936d1ee99a4e8efa6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.7.0", "os": "linux", "version": "2.24.0", "date": "2026-05-30T05:26:25.000Z", "distro": "noble", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "edac80e6f1c0da30d6786bd1df7c4a43cdb661bf5dedef9d52f09ca972df9670", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.6.0", "os": "linux", "version": "2.24.0", "date": "2026-05-30T05:23:22.000Z", "distro": "noble", "arch": "aarch64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "63d510d0f9ba5cc9eddaab1a4bbb9d29db153f42dea094ae56eb14795a6ac4ec", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.6.0", "os": "linux", "version": "2.24.0", "date": "2026-05-30T05:26:05.000Z", "distro": "noble", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "a3a5ac160d90c0ac60529c666a3deb301622c1aec2efaf0df36fa944c808e890", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.5.3", "os": "mac", "version": "2.24.0", "date": "2026-05-30T05:48:21.000Z", "arch": "aarch64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "19e254452cab299c574f965e09bd42ff4c83c877cfc1f56836bf8d8d1adf6e49", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.5.3", "os": "mac", "version": "2.24.0", "date": "2026-05-30T05:50:56.000Z", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "2ae2693ccfb75b8cef8d979a5ad6b8257d4b08d14fbe2e1a1ba427cb882cae07", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.6.0", "os": "mac", "version": "2.24.0", "date": "2026-05-30T05:48:44.000Z", "arch": "aarch64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "37dee16a5d6deacdf66ebb81109f1f43fb350ca3b994d7c3fd966154cbd260b5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.6.0", "os": "mac", "version": "2.24.0", "date": "2026-05-30T05:50:28.000Z", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "e6d82c12d8c05aa815b4cc604f504d953b58cc0698f8bcd8cecc14596714ea18", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.7.0", "os": "win", "version": "2.24.0", "date": "2026-05-30T05:23:50.000Z", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "6fdb8e45c1277ad0e845a292e330ed6ae1c7a8a17f0e58d04ac73dd71ba18992", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.5.3", "os": "win", "version": "2.24.0", "date": "2026-05-30T05:23:41.000Z", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "94b807c2530798dbf9bd426181d8659b059a484f6d3071b47ccef8ad3ce69e29", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" }, { "r": "4.6.0", "os": "win", "version": "2.24.0", "date": "2026-05-30T05:23:41.000Z", "arch": "x86_64", "commit": "a53b8800bcf1b7639827aecd474ae98e0ede4f2c", "fileid": "381d827f5313a3cefc272ba095a93dc7d90498142d1c3e3d157ecac54d6d27b0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621199140" } ] }