{
  "_id": "6a1947d9acfb0bcc41dda6c0",
  "Package": "flowPeaks",
  "Version": "1.58.0",
  "Date": "1-12-2012",
  "Title": "An R package for flow data clustering",
  "Author": "Yongchao Ge<yongchao.ge@gmail.com>",
  "Maintainer": "Yongchao Ge<yongchao.ge@gmail.com>",
  "Description": "A fast and automatic clustering to classify the cells into\nsubpopulations based on finding the peaks from the overall\ndensity function generated by K-means.",
  "License": "Artistic-1.0",
  "biocViews": "ImmunoOncology, FlowCytometry, Clustering, Gating",
  "SystemRequirements": "gsl",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-29 06:58:43 UTC",
    "User": "root"
  },
  "git_url": "https://git.bioconductor.org/packages/flowPeaks",
  "git_branch": "RELEASE_3_15",
  "git_last_commit": "da9fd47",
  "git_last_commit_date": "2022-04-26",
  "Config/pak/sysreqs": "libgsl0-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:36:35 UTC",
  "RemoteUrl": "https://github.com/bioc/flowPeaks",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
  "MD5sum": "70e1619be843ee44df5e5f3529ddc321",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "flowPeaks_1.58.0.tar.gz",
  "_fileid": "4c6909ec4d11b9b20c5b656f27f6d492b77a69bee7553c48c09087f07bdc4c09",
  "_filesize": 2842384,
  "_sha256": "4c6909ec4d11b9b20c5b656f27f6d492b77a69bee7553c48c09087f07bdc4c09",
  "_created": "2026-05-29T06:58:43.000Z",
  "_published": "2026-05-29T08:01:29.404Z",
  "_jobs": [
    {
      "job": 78453377504,
      "time": 147,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284963316"
    },
    {
      "job": 78453377523,
      "time": 134,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284960220"
    },
    {
      "job": 78453377501,
      "time": 188,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284973284"
    },
    {
      "job": 78453377529,
      "time": 179,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284970983"
    },
    {
      "job": 78453377498,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284966976"
    },
    {
      "job": 78453377507,
      "time": 107,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7285940341"
    },
    {
      "job": 78453377512,
      "time": 222,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7285925966"
    },
    {
      "job": 78453377514,
      "time": 142,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285952223"
    },
    {
      "job": 78453377500,
      "time": 201,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285917597"
    },
    {
      "job": 78452900270,
      "time": 233,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284927824"
    },
    {
      "job": 78453377486,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284957794"
    },
    {
      "job": 78453377493,
      "time": 151,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7284964584"
    },
    {
      "job": 78453377488,
      "time": 137,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7284961145"
    },
    {
      "job": 78453377479,
      "time": 136,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7284960509"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 6,
    "note": 16
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/flowPeaks",
  "_commit": {
    "id": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379795
  },
  "_maintainer": {
    "name": "Yongchao Ge",
    "email": "yongchao.ge@gmail.com",
    "login": "yongchao",
    "description": "",
    "uuid": 1541687
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.12.0",
      "role": "Depends"
    },
    {
      "package": "flowCore",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.59.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.58.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "flowcytometry",
    "clustering",
    "gating",
    "gsl",
    "cpp"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 574,
    "source": "https://www.bioconductor.org/packages/stats/bioc/flowPeaks"
  },
  "_mentions": 11,
  "_searchresults": 39,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/flowPeaks.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "adjust.flowPeaks",
    "assign.flowPeaks",
    "evalCluster",
    "flowPeaks"
  ],
  "_datasets": [
    {
      "name": "barcode",
      "title": "The barcode dataset",
      "object": "barcode",
      "file": "barcode.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Pacific.blue",
        "Alexa",
        "APC"
      ],
      "rows": 180912,
      "table": true,
      "tojson": true
    },
    {
      "name": "barcode.cid",
      "title": "The barcode dataset",
      "object": "barcode",
      "file": "barcode.RData",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "concave",
      "title": "The concave dataset",
      "object": "concave",
      "file": "concave.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "y"
      ],
      "rows": 2729,
      "table": true,
      "tojson": true
    },
    {
      "name": "concave.cid",
      "title": "The concave dataset",
      "object": "concave",
      "file": "concave.RData",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "adjust.flowPeaks",
      "title": "Adjusting the smoothing and merging behavior of the flowPeaks results",
      "topics": [
        "adjust.flowPeaks"
      ]
    },
    {
      "page": "assign.flowPeaks",
      "title": "Obtain the flowPeaks cluster lables with the option of identifying outliers and applying to a new data set",
      "topics": [
        "assign.flowPeaks"
      ]
    },
    {
      "page": "barcode",
      "title": "The barcode dataset",
      "topics": [
        "barcode",
        "barcode.cid"
      ]
    },
    {
      "page": "concave",
      "title": "The concave dataset",
      "topics": [
        "concave",
        "concave.cid"
      ]
    },
    {
      "page": "evalCluster",
      "title": "evaulate the result of a clustering algorihm by comparing it with the gold standard",
      "topics": [
        "evalCluster"
      ]
    },
    {
      "page": "flowPeaks",
      "title": "Doing the flowPeaks analysis",
      "topics": [
        "flowPeaks"
      ]
    },
    {
      "page": "plot.flowPeaks",
      "title": "Plot the results generated by flowPeaks",
      "topics": [
        "plot.flowPeaks"
      ]
    },
    {
      "page": "print.flowPeaks",
      "title": "The display of the flowPeaks results",
      "topics": [
        "print.flowPeaks"
      ]
    },
    {
      "page": "summary.flowPeaks",
      "title": "The summary of the flowPeaks results",
      "topics": [
        "summary.flowPeaks"
      ]
    }
  ],
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libgsl",
      "package": "libgsl27",
      "headers": "libgsl-dev",
      "source": "gsl",
      "version": "2.7.1+dfsg-6ubuntu2",
      "name": "gsl",
      "homepage": "https://www.gnu.org/software/gsl",
      "description": "GNU Scientific Library (GSL) -- library package"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "flowPeaks-guide.Rnw",
      "filename": "flowPeaks-guide.pdf",
      "title": "Tutorial of flowPeaks package",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:25:58",
      "modified": "2018-09-06 15:51:20",
      "commits": 3
    }
  ],
  "_score": 5.846337112129805,
  "_indexed": false,
  "_nocasepkg": "flowpeaks",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/flowPeaks",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.58.0",
      "date": "2026-05-29T07:01:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "3fd3c298482be7725639735c4a74768ea2096ae896983e9482a0a9ba61c9a817",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.58.0",
      "date": "2026-05-29T07:01:53.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "6f15fea42f62988f4c035089da2602ca3fefe970469b85f98d0eeb78db7ed32b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.58.0",
      "date": "2026-05-29T07:01:45.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "c76e13224b4a580d7d5de641532560316d92e6c408d267ac55c33d5b4ecd8cca",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.58.0",
      "date": "2026-05-29T07:01:27.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "8b724f1ead7f29897fc4b2162f13e9a3291845931275560a6d40508fa34f8f52",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.58.0",
      "date": "2026-05-29T07:59:57.000Z",
      "arch": "aarch64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "fc55456e43b1c3f2687b9a13df8018a077f8b83a4092c3ba0b2be5b1e80c8918",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.58.0",
      "date": "2026-05-29T07:58:41.000Z",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "616359aa3464db1468f0a7762ff114002cb6a8ede0530bae52a15f6795dc23e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.58.0",
      "date": "2026-05-29T08:00:30.000Z",
      "arch": "aarch64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "8ec50fd65a393593ba783e213ff6bd8f4b0396a92b0eaf5e59460124ceedca69",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.58.0",
      "date": "2026-05-29T07:58:13.000Z",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "2821bc9940748fbae9b53300894f7061dfee3505fdc546758ac51bf9342c91f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.58.0",
      "date": "2026-05-29T07:00:57.000Z",
      "arch": "emscripten",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "5f04f0c29076723ffd135bb5ec126c005b566c01dc5c18471bcb5a8da53d3b49",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.58.0",
      "date": "2026-05-29T07:00:30.000Z",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "80aecc766b4c81484d6a26b5f9c021c3d3219b78c1a9dd6e871325df55471259",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.58.0",
      "date": "2026-05-29T07:00:29.000Z",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "6ccab6bee36aa4826e6e0c788fefe155c6c934a375dac8e051181582752fd627",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.58.0",
      "date": "2026-05-29T07:00:13.000Z",
      "arch": "x86_64",
      "commit": "4bb73e9f3c12c44b9334f4b9e51bf04304134509",
      "fileid": "88fe43045d551218e8b3c8ab00ba3043b46c74c32c9905fd9c07f0df377f7525",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622944187"
    }
  ]
}