{ "_id": "6a2e55ef3efcd9bda430a31f", "Package": "gdsfmt", "Type": "Package", "Title": "R Interface to CoreArray Genomic Data Structure (GDS) Files", "Version": "1.48.1", "Date": "2026-05-15", "Author": "Xiuwen Zheng [aut, cre]\n(), Stephanie Gogarten\n[ctb], Jean-loup Gailly and Mark Adler [ctb] (for the included\nzlib sources), Yann Collet [ctb] (for the included LZ4\nsources), xz contributors [ctb] (for the included liblzma\nsources)", "Maintainer": "Xiuwen Zheng ", "Description": "Provides a high-level R interface to CoreArray Genomic\nData Structure (GDS) data files. GDS is portable across\nplatforms with hierarchical structure to store multiple\nscalable array-oriented data sets with metadata information. It\nis suited for large-scale datasets, especially for data which\nare much larger than the available random-access memory. The\ngdsfmt package offers the efficient operations specifically\ndesigned for integers of less than 8 bits, since a diploid\ngenotype, like single-nucleotide polymorphism (SNP), usually\noccupies fewer bits than a byte. Data compression and\ndecompression are available with relatively efficient random\naccess. It is also allowed to read a GDS file in parallel with\nmultiple R processes supported by the package parallel.", "License": "LGPL-3", "Copyright": "This package includes the sources of CoreArray C++ library\nwritten by Xiuwen Zheng (LGPL-3), zlib written by Jean-loup\nGailly and Mark Adler (zlib license), LZ4 written by Yann\nCollet (simplified BSD), and liblzma written by Lasse Collin\nand other xz contributors (public domain).", "VignetteBuilder": "knitr", "ByteCompile": "TRUE", "BugReports": "https://github.com/zhengxwen/gdsfmt/issues", "URL": "https://github.com/zhengxwen/gdsfmt", "biocViews": "Infrastructure, DataImport", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-05-15 06:29:46 UTC", "RemoteUrl": "https://github.com/bioc/gdsfmt", "RemoteRef": "RELEASE_3_23", "RemoteSha": "469cbe2d33ab8b0095505d8e0bff5dc01c5ebe4b", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-14 07:06:39 UTC", "User": "root" }, "MD5sum": 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}, { "page": "assign.gdsn", "title": "Assign/append data to a GDS node", "topics": [ "assign.gdsn" ] }, { "page": "cache.gdsn", "title": "Caching variable data", "topics": [ "cache.gdsn" ] }, { "page": "cleanup.gds", "title": "Clean up fragments", "topics": [ "cleanup.gds" ] }, { "page": "closefn.gds", "title": "Close a GDS file", "topics": [ "closefn.gds" ] }, { "page": "clusterApply.gdsn", "title": "Apply functions over matrix margins in parallel", "topics": [ "clusterApply.gdsn" ] }, { "page": "cnt.gdsn", "title": "Return the number of child nodes", "topics": [ "cnt.gdsn" ] }, { "page": "compression.gdsn", "title": "Modify compression mode", "topics": [ "compression.gdsn" ] }, { "page": "copyto.gdsn", "title": "Copy GDS nodes", "topics": [ "copyto.gdsn" ] }, { "page": "createfn.gds", "title": "Create a GDS file", "topics": [ "createfn.gds" ] }, { "page": "delete.attr.gdsn", "title": "Delete attribute(s)", "topics": [ "delete.attr.gdsn" ] }, { "page": "delete.gdsn", "title": "Delete 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