{ "_id": "6a22aae90ef520ea2f58b5ac", "Package": "geneRecommender", "Version": "1.84.0", "Date": "2005-04-5", "Title": "A gene recommender algorithm to identify genes coexpressed with\na query set of genes", "Author": "Gregory J. Hather , with contributions from\nArt B. Owen and Terence P. Speed\n", "Maintainer": "Greg Hather ", "Description": "This package contains a targeted clustering algorithm for\nthe analysis of microarray data. The algorithm can aid in the\ndiscovery of new genes with similar functions to a given list\nof genes already known to have closely related functions.", "License": "GPL (>= 2)", "biocViews": "Microarray, Clustering", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:31:07 UTC", "RemoteUrl": "https://github.com/bioc/geneRecommender", "RemoteRef": "RELEASE_3_23", "RemoteSha": "aac44778a13981bb45a79a431ba523a0a588327a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 10:51:53 UTC", "User": "root" }, "MD5sum": "af824b3f2c205d04d076b8af21ec12c7", "_user": "bioc-release", "_type": "src", "_file": "geneRecommender_1.84.0.tar.gz", "_fileid": "aaa0ca1047b540ddf346aa78666bfb6b5216bf5a46d048d4cf30ba8c52ac13fa", "_filesize": 240790, "_sha256": "aaa0ca1047b540ddf346aa78666bfb6b5216bf5a46d048d4cf30ba8c52ac13fa", "_created": "2026-06-05T10:51:53.000Z", "_published": "2026-06-05T10:54:33.621Z", "_jobs": [ { "job": 79713220750, "time": 128, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7434842388" }, { "job": 79713220735, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7434842188" }, { "job": 79713220746, "time": 118, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7434839758" }, { "job": 79713220787, "time": 75, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7434827813" }, { "job": 79713220781, "time": 79, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7434829343" }, { "job": 79712858604, "time": 153, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7434807045" }, { "job": 79713220771, "time": 88, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7434831736" }, { "job": 79713220853, "time": 77, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7434828568" }, { "job": 79713220734, "time": 63, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7434824768" }, { "job": 79713220783, "time": 73, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7434827513" } ], "_bioccheck": { "error": 1, "warning": 2, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/geneRecommender", "_commit": { "id": "aac44778a13981bb45a79a431ba523a0a588327a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379467 }, "_maintainer": { "name": "Greg Hather", "email": "ghather@gmail.com", "login": "ghather", "description": "Data scientist", "uuid": 91537 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 1.8.0", "role": "Depends" }, { "package": "Biobase", "version": ">= 1.4.22", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Biobase", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23" } ], "_topics": [ "microarray", "clustering" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 446, "source": "https://www.bioconductor.org/packages/stats/bioc/geneRecommender" }, "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/geneRecommender.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "gr.cv", "gr.main", "gr.normalize" ], "_help": [ { "page": "gr.cv", "title": "A function for cross validation", "topics": [ "gr.cv" ] }, { "page": "gr.main", "title": "A gene recommender algorithm to identify genes coexpressed with a query set of genes", "topics": [ "gr.main" ] }, { "page": "gr.normalize", "title": "A function for normalization", "topics": [ "gr.normalize" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "generics" ], "_vignettes": [ { "source": "geneRecommender.Rnw", "filename": "geneRecommender.pdf", "title": "Using the geneRecommender Package", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 19:54:03", "modified": "2013-11-01 19:54:03", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "generecommender", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/geneRecommender", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.84.0", "date": "2026-06-05T10:53:58.000Z", "distro": "noble", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "ce0c8ab193881a96797c4a642a66596184d4e5a746bc497d2dbcab2975dfd320", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.6.0", "os": "linux", "version": "1.84.0", "date": "2026-06-05T10:53:50.000Z", "distro": "noble", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "a26a3f472acabb9dd9f6bf190000a758d0b2ac462cea6eac978c39af6f63ee12", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.5.3", "os": "mac", "version": "1.84.0", "date": "2026-06-05T10:53:11.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "a528e31529f9f459bde87cf9260fd1df438e5771a3ac73a3032e72a54c7ecdd0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.6.0", "os": "mac", "version": "1.84.0", "date": "2026-06-05T10:53:16.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "d9c903124e2da5eed47beb7390dd7990f774ac7fa368a17318b97257ff397b2b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.6.0", "os": "wasm", "version": "1.84.0", "date": "2026-06-05T10:53:35.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "37ae5c7e5aa85ac8781785e4501ec72b5970027f12b22bb62e534bd406c7a798", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.7.0", "os": "win", "version": "1.84.0", "date": "2026-06-05T10:53:04.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "ad9c9fe909f12b9e9109e51a6e7d54f7bae31a92b46fa1d4812b293bd49078a9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.5.3", "os": "win", "version": "1.84.0", "date": "2026-06-05T10:52:50.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "acbf7ac588afc81ee2a716ff4866058b6b7964f3949d97f7d71856d09975ef7a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" }, { "r": "4.6.0", "os": "win", "version": "1.84.0", "date": "2026-06-05T10:52:59.000Z", "commit": "aac44778a13981bb45a79a431ba523a0a588327a", "fileid": "3447d91c4236f63f56abb2e81820b5553ec0652fe2f24bd540ff496b6d11afbf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27010554980" } ] }