{
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  "Package": "ggmanh",
  "Title": "Visualization Tool for GWAS Result",
  "Version": "1.16.0",
  "Authors@R": "c(\nperson(given = \"John\", family = \"Lee\", role = c(\"aut\", \"cre\"), email = \"swannyy.stat@gmail.com\"),\nperson(given = \"John\", family = \"Lee\", role = c(\"aut\"), email = \"john.lee@abbvie.com\", comment = \"AbbVie\"),\nperson(given = \"Xiuwen\", family = \"Zheng\", role = c(\"ctb\", \"dtc\"), email = \"xiuwen.zheng@abbvie.com\")\n)",
  "Description": "Manhattan plot and QQ Plot are commonly used to visualize\nthe end result of Genome Wide Association Study. The \"ggmanh\"\npackage aims to keep the generation of these plots simple while\nmaintaining customizability. Main functions include\nmanhattan_plot, qqunif, and thinPoints.",
  "biocViews": "Visualization, GenomeWideAssociation, Genetics",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
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  "Config/testthat/edition": "3",
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  "Config/pak/sysreqs": "libicu-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:32 UTC",
  "RemoteUrl": "https://github.com/bioc/ggmanh",
  "RemoteRef": "RELEASE_3_23",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "John Lee [aut, cre],\nJohn Lee [aut] (AbbVie),\nXiuwen Zheng [ctb, dtc]",
  "Maintainer": "John Lee <swannyy.stat@gmail.com>",
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    "description": "Mathematics & Statistics Major.\nHi :)",
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  "_usedby": 0,
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      "week": "2025-44",
      "n": 2
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    "genomewideassociation",
    "genetics"
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    "type": "organization",
    "name": "Bioconductor",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.json",
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    "manual.pdf"
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  "_cranurl": false,
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    "binned_manhattan_preprocess",
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    "default_gds_path",
    "gds_annotate",
    "manhattan_data_preprocess",
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    "manhattan_plot.default",
    "qqunif",
    "thinPoints"
  ],
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    {
      "page": "binned_manhattan_plot",
      "title": "Plot Binned Manhattan Plot",
      "topics": [
        "binned_manhattan_plot",
        "binned_manhattan_plot,GRanges-method",
        "binned_manhattan_plot.data.frame",
        "binned_manhattan_plot.default",
        "binned_manhattan_plot.MPdataBinned"
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    },
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      "title": "Preprocess GWAS Result for Binned Manhattan Plot",
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        "binned_manhattan_preprocess,GRanges-method",
        "binned_manhattan_preprocess.data.frame",
        "binned_manhattan_preprocess.default",
        "binned_manhattan_preprocess.MPdata"
      ]
    },
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      "title": "Calculate new x-position of each point",
      "topics": [
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      ]
    },
    {
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      "title": "Path to Default GDS File",
      "topics": [
        "default_gds_path"
      ]
    },
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      "page": "gds_annotate",
      "title": "Annotation with GDS File",
      "topics": [
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      ]
    },
    {
      "page": "ggmanh",
      "title": "ggmanh: A package for visualization of GWAS results.",
      "topics": [
        "ggmanh"
      ]
    },
    {
      "page": "ggmanh_annotation_gds",
      "title": "gnomAD Variant Annotation in SeqArray Format",
      "topics": [
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      ]
    },
    {
      "page": "manhattan_data_preprocess",
      "title": "Preprocess GWAS Result",
      "topics": [
        "manhattan_data_preprocess",
        "manhattan_data_preprocess,GRanges-method",
        "manhattan_data_preprocess.data.frame",
        "manhattan_data_preprocess.default"
      ]
    },
    {
      "page": "manhattan_plot",
      "title": "Manhattan Plotting",
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        "manhattan_plot,GRanges-method",
        "manhattan_plot.data.frame",
        "manhattan_plot.default",
        "manhattan_plot.MPdata"
      ]
    },
    {
      "page": "qqunif",
      "title": "Plot Quantile-Quantile Plot of p-values against uniform distribution.",
      "topics": [
        "qqunif"
      ]
    },
    {
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      "title": "Thin Data Points",
      "topics": [
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      ]
    }
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