{ "_id": "6a1ade911d7bb097a09ebd02", "Package": "hca", "Title": "Exploring the Human Cell Atlas Data Coordinating Platform", "Version": "1.20.0", "Authors@R": "c(person(given = \"Maya\", family = \"McDaniel\", role = \"aut\"),\nperson(given = \"Martin\",\nfamily = \"Morgan\",\nrole = c(\"aut\", \"cre\"),\nemail = \"martin.morgan@roswellpark.org\",\ncomment = c(ORCID = \"0000-0002-5874-8148\")\n),\nperson(given = \"Kayla\", family = \"Interdonato\", role = \"ctb\")\n)", "Description": "This package provides users with the ability to query the\nHuman Cell Atlas data repository for single-cell experiment\ndata. The `projects()`, `files()`, `samples()` and `bundles()`\nfunctions retrieve summary information on each of these\nindexes; corresponding `*_details()` are available for\nindividual entries of each index. File-based resources can be\ndownloaded using `files_download()`. Advanced use of the\npackage allows the user to page through large result sets, and\nto flexibly query the 'list-of-lists' structure representing\nquery responses.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "biocViews": "Software, SingleCell", "PackageStatus": "Deprecated", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:55:05 UTC", "RemoteUrl": "https://github.com/bioc/hca", "RemoteRef": "RELEASE_3_23", "RemoteSha": "cef52d8af95d7044b09169b80125baadd8c04bed", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:14:44 UTC", "User": "root" }, "Author": "Maya McDaniel [aut],\nMartin Morgan [aut, cre] (ORCID:\n),\nKayla Interdonato [ctb]", "Maintainer": "Martin Morgan ", "MD5sum": "3d9a48a348dce651df748e2bd8e67152", "_user": "bioc-release", "_type": "src", "_file": "hca_1.20.0.tar.gz", "_fileid": "a1d283f5aeb93b34988ea07e58868b21234b4e5342bbf735e4cc19f81f76749c", "_filesize": 176225, "_sha256": "a1d283f5aeb93b34988ea07e58868b21234b4e5342bbf735e4cc19f81f76749c", "_created": "2026-05-30T09:14:44.000Z", "_published": "2026-05-30T12:56:49.277Z", "_jobs": [ { "job": 78638987163, "time": 168, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7307149151" }, { "job": 78638987169, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7307156474" }, { "job": 78638987177, "time": 296, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7307161034" }, { "job": 78638987170, "time": 160, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7308339900" }, { "job": 78638987156, "time": 152, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7308339145" }, { "job": 78638759226, "time": 201, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7307101311" }, { "job": 78638987150, "time": 154, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307147856" }, { "job": 78638987167, "time": 208, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7307153261" }, { "job": 78638987176, "time": 156, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7307148483" }, { "job": 78638987183, "time": 156, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7307148480" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680018132", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/hca", "_commit": { "id": "cef52d8af95d7044b09169b80125baadd8c04bed", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380905 }, "_maintainer": { "name": "Martin Morgan", "email": "martin.morgan@roswellpark.org", "login": "mtmorgan", "orcid": "0000-0002-5874-8148", "description": "", "uuid": 118552 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "miniUI", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "LoomExperiment", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "S4Vectors", "role": "Suggests" }, { "package": "methods", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-11", "n": 1 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_topics": [ "software", "singlecell" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 258, "source": "https://www.bioconductor.org/packages/stats/bioc/hca" }, "_searchresults": 61, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/hca.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_cranurl": false, "_exports": [ ".hca_bind", ".is_catalog", ".is_character", ".is_character_0", ".is_scalar", ".is_scalar_character", ".is_scalar_integer", ".is_scalar_logical", ".is_scalar_numeric", ".is_vector_0", "bundles", "bundles_default_columns", "bundles_detail", "bundles_facets", "catalogs", "facet_options", "files", "files_cache", "files_default_columns", "files_detail", "files_download", "files_facets", "filters", "hca_next", "hca_prev", "hca_view", "lol", "lol_filter", "lol_hits_lpull", "lol_hits_pull", "lol_lpull", "lol_path", "lol_pull", "lol_select", "manifest", "manifest_cache", "optimus_loom_annotation", "project_information", "project_title", "projects", "projects_default_columns", "projects_detail", "projects_facets", "samples", "samples_default_columns", "samples_detail", "samples_facets", "summary" ], "_help": [ { "page": "details", "title": "Single Entity Details", "topics": [ ".details" ] }, { "page": "bundles", "title": "HCA Bundle Querying", "topics": [ "bundles", "bundles_default_columns", "bundles_detail", "bundles_facets" ] }, { "page": "catalogs", "title": "Catalogs Available in the HCA", "topics": [ "catalogs" ] }, { "page": "files", "title": "HCA File Querying", "topics": [ "files", "files_cache", "files_default_columns", "files_detail", "files_download", "files_facets" ] }, { "page": "filters", "title": "HCA Filter Construction", "topics": [ "facet_options", "filters", "length.filters", "print.filters" ] }, { "page": "hca", "title": "Page through HCA results", "topics": [ "hca_next", "hca_prev" ] }, { "page": "list_hca", "title": "'list' representation of HCA query results", "topics": [ "hca_next.list_hca", "hca_prev.list_hca" ] }, { "page": "tbl_hca", "title": "'tibble' representation of HCA query results", "topics": [ "hca_next.tbl_hca", "hca_prev.tbl_hca" ] }, { "page": "hca_view", "title": "View and select table rows interactively", "topics": [ "hca_view" ] }, { "page": "lol", "title": "Representing and manipulating list-of-list data structures.", "topics": [ "as.list.lol", "hca_next.lol_hca", "hca_prev.lol_hca", "lol", "lol_filter", "lol_hits_lpull", "lol_hits_pull", "lol_lpull", "lol_path", "lol_pull", "lol_select", "print.lol" ] }, { "page": "manifest", "title": "HCA File Querying", "topics": [ "manifest", "manifest_cache" ] }, { "page": "optimus_loom_annotation", "title": "HCA loom file annotation", "topics": [ "optimus_loom_annotation", "optimus_loom_annotation.character", "optimus_loom_annotation.LoomExperiment" ] }, { "page": "project_information", "title": "Project Summaries from Project IDs", "topics": [ "print.project_information", "project_information", "project_title" ] }, { "page": "projects", "title": "HCA Project Querying", "topics": [ "projects", "projects_default_columns", "projects_detail", "projects_facets" ] }, { "page": "samples", "title": "HCA Sample Querying", "topics": 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