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  "Title": "CellScore Standard Cell Types Expression Dataset [hgu133plus2]",
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  "Author": "Nancy Mah, Katerina Taskova",
  "Maintainer": "Nancy Mah <nancy.l.mah@googlemail.com>",
  "Description": "The CellScore Standard Dataset contains expression data\nfrom a wide variety of human cells and tissues, which should be\nused as standard cell types in the calculation of the\nCellScore. All data was curated from public databases such as\nGene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/) or\nArrayExpress (https://www.ebi.ac.uk/arrayexpress/). This\nstandard dataset only contains data from the Affymetrix\nGeneChip Human Genome U133 Plus 2.0 microarrays. Samples were\nmanually annotated using the database information or consulting\nthe publications in which the datasets originated. The sample\nannotations are stored in the phenoData slot of the\nexpressionSet object. Raw data (CEL files) were processed with\nthe affy package to generate present/absent calls (mas5calls)\nand background-subtracted values, which were then normalized by\nthe R-package yugene to yield the final expression values for\nthe standard expression matrix. The annotation table for the\nmicroarray was retrieved from the BioC annotation package\nhgu133plus2. All data are stored in an expressionSet object.",
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  "Date/Publication": "2026-04-28 12:31:03 UTC",
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    "author": "lshep <lori.shepherd@roswellpark.org>",
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      "title": "Standard Samples for CellScore [hgu133plus2]",
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      "title": "Standard Samples for CellScore [hgu133plus2]",
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      "filename": "hgu133plus2Vignette.pdf",
      "title": "R packages: hgu133plus2CellScore",
      "engine": "knitr::knitr",
      "headings": [
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        "Installation",
        "How the hgu133plus2CellScore data package was assembled",
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      "modified": "2018-08-31 18:01:15",
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