{ "_id": "6a1e983e1d7bb097a0a6d728", "Package": "iASeq", "Type": "Package", "Title": "iASeq: integrating multiple sequencing datasets for detecting\nallele-specific events", "Version": "1.56.0", "Date": "2012-02-13", "Author": "Yingying Wei, Hongkai Ji", "Maintainer": "Yingying Wei ", "Description": "It fits correlation motif model to multiple RNAseq or\nChIPseq studies to improve detection of allele-specific events\nand describe correlation patterns across studies.", "License": "GPL-2", "LazyLoad": "yes", "Packaged": { "Date": "2026-06-02 08:42:22 UTC", "User": "root" }, "biocViews": "ImmunoOncology, SNP, RNASeq, ChIPSeq", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:36:27 UTC", "RemoteUrl": "https://github.com/bioc/iASeq", "RemoteRef": "RELEASE_3_23", "RemoteSha": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "NeedsCompilation": "no", "MD5sum": "0869c89d46788796ef3eb4a42d1934d0", "_user": "bioc-release", "_type": "src", "_file": "iASeq_1.56.0.tar.gz", "_fileid": "5a61cfede1c694c54d6c261082544faee9f0dc0d61d23d4c4b4dc1f532460656", "_filesize": 244622, "_sha256": "5a61cfede1c694c54d6c261082544faee9f0dc0d61d23d4c4b4dc1f532460656", "_created": "2026-06-02T08:42:22.000Z", "_published": "2026-06-02T08:45:50.760Z", "_jobs": [ { "job": 79032668600, "time": 122, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7353029656" }, { "job": 79032668736, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7353046339" }, { "job": 79032668521, "time": 124, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7353030026" }, { "job": 79032668651, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7353025333" }, { "job": 79032668522, "time": 84, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7353015839" }, { "job": 79032223088, "time": 152, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7352984475" }, { "job": 79032668505, "time": 82, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7353015393" }, { "job": 79032668577, "time": 64, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7353008760" }, { "job": 79032668540, "time": 57, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7353006599" }, { "job": 79032668595, "time": 75, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7353012680" } ], "_bioccheck": { "error": 1, "warning": 4, "note": 15 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/iASeq", "_commit": { "id": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379787 }, "_maintainer": { "name": "Yingying Wei", "email": "ywei@jhsph.edu" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.14.1", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.57.0", "bioc": "3.24" }, { "branch": "release", "version": "1.56.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "snp", "rnaseq", "chipseq" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 346, "source": "https://www.bioconductor.org/packages/stats/bioc/iASeq" }, "_mentions": 4, "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/iASeq.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "ASErawfit", "iASeqmotif", "plotBIC", "plotMotif", "singleEMfit" ], "_datasets": [ { "name": "sampleASE_exprs", "title": "Example Dataset for iASeq", "object": "sampleASE", "file": "sampleASE.RData", "class": [ "matrix", "array" ], "fields": [ "BroadH3k27ac_A", "BroadH3k27ac_B", "BroadH3k27acR_A", "BroadH3k27acR_B", "BroadH3k27me3_A", "BroadH3k27me3_B", "BroadH3k27me3R_A", "BroadH3k27me3R_B", "UWH3k27me3_A", "UWH3k27me3_B", "UWH3k27me3R_A", "UWH3k27me3R_B", "BroadH3k36me3_A", "BroadH3k36me3_B", "BroadH3k36me3R_A", "BroadH3k36me3R_B", "UWH3k36me3_A", "UWH3k36me3_B", "UWH3k36me3R_A", "UWH3k36me3R_B" ], "rows": 5504, "table": true, "tojson": true }, { "name": "sampleASE_refid", "title": "Example Dataset for iASeq", "object": "sampleASE", "file": "sampleASE.RData", "class": [ "integer" ], "fields": [], "table": false, "tojson": true }, { "name": "sampleASE_repid", "title": "Example Dataset for iASeq", "object": "sampleASE", "file": "sampleASE.RData", "class": [ "integer" ], "fields": [], "table": false, "tojson": true }, { "name": "sampleASE_studyid", "title": "Example Dataset for iASeq", "object": "sampleASE", "file": "sampleASE.RData", "class": [ "integer" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "iASeq-package", "title": "iASeq: integrating multiple sequencing datasets for detecting allele-specific events", "topics": [ "iASeq-package", "iASeq" ] }, { "page": "ASErawfit", "title": "Single Study Based Statistics for Allele Specific Events", "topics": [ "ASErawfit" ] }, { "page": "iASeq-internal", "title": "iASeq Internal Functions", "topics": [ "f0.loglike", "fdown.loglike", "fup.loglike", "iASeqmotiffit" ] }, { "page": "iASeqmotif", "title": "Correlation Motif Fit for Allele Specific Events", "topics": [ "iASeqmotif" ] }, { "page": "plotBIC", "title": "BIC Plot", "topics": [ "plotBIC" ] }, { "page": "plotMotif", "title": "Correlation Motif Plot", "topics": [ "plotMotif" ] }, { "page": "sampleASE", "title": "Example Dataset for iASeq", "topics": [ "sampleASE", "sampleASE_exprs", "sampleASE_refid", "sampleASE_repid", "sampleASE_studyid" ] }, { "page": "singleEMfit", "title": "Single Study EM Fit for Allele Specific Events", "topics": [ "singleEMfit" ] } ], "_rundeps": [], "_vignettes": [ { "source": "iASeqVignette.Rnw", "filename": "iASeqVignette.pdf", "title": "iASeq Vignette", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:25:24", "modified": "2013-11-01 20:25:24", "commits": 1 } ], "_score": 3.9030899869919438, "_indexed": false, "_nocasepkg": "iaseq", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/iASeq", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.56.0", "date": "2026-06-02T08:45:18.000Z", "distro": "noble", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "5c1813d8d96722c22d3722fa5fd77dad1d39bf1143ec5f12f5cf8d93701f6d70", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.6.0", "os": "linux", "version": "1.56.0", "date": "2026-06-02T08:44:31.000Z", "distro": "noble", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "3f61d8efa3514f20e15225439fa09238f77ec5d8e6f21d78d82309e14a316a3d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.5.3", "os": "mac", "version": "1.56.0", "date": "2026-06-02T08:44:20.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "20c297460dd2216b841bb767e05459403da73571f3da050ca8cc0ce8b992c0f2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.6.0", "os": "mac", "version": "1.56.0", "date": "2026-06-02T08:43:52.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "87fd82d31a5ba6063aae971e45a37ea9a16586fe5a8b1983cd350ba628c7924e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.6.0", "os": "wasm", "version": "1.56.0", "date": "2026-06-02T08:44:03.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "4024cf8e16cc502f689405576ffd0a8e8faf625140a057d543dcff980da0409b", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.7.0", "os": "win", "version": "1.56.0", "date": "2026-06-02T08:43:27.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "ac70ba05a8492a33f36a76f7adcd77072c1876f580917a8f71814d48df1c7295", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.5.3", "os": "win", "version": "1.56.0", "date": "2026-06-02T08:43:22.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "af771832b68ebaef709865e445c4d12ddfeea6103772b738137a9bae09c840bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" }, { "r": "4.6.0", "os": "win", "version": "1.56.0", "date": "2026-06-02T08:43:31.000Z", "commit": "d7f4775033f3d0d2167e96abaf568480dc668dd6", "fileid": "1819d289db227bad2cfffac34014b1155fff0aa73370defeeca60a0380967442", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808531594" } ] }