{
  "_id": "6acc9ff9a14063b82c3a7034",
  "Package": "imcdatasets",
  "Version": "1.20.1",
  "Date": "2026-07-20",
  "Title": "Collection of publicly available imaging mass cytometry (IMC)\ndatasets",
  "Description": "The imcdatasets package provides access to publicly\navailable IMC datasets. IMC is a technology that enables\nmeasurement of > 40 proteins from tissue sections. The\ngenerated images can be segmented to extract single cell data.\nDatasets typically consist of three elements: a\nSingleCellExperiment object containing single cell data, a\nCytoImageList object containing multichannel images and a\nCytoImageList object containing the cell masks that were used\nto extract the single cell data from the images.",
  "Authors@R": "c(person(\"Nicolas\", \"Damond\", role = c(\"aut\"),\nemail = \"nicolas.damond@dqbm.uzh.ch\",\ncomment = c(ORCID = \"0000-0003-3027-8989\")),\nperson(\"Nathan\", \"Steenbuck\", role = c(\"aut\", \"cre\"),\nemail = \"nathan.steenbuck@uzh.ch\",\ncomment = c(ORCID = \"0000-0003-2712-5359\")),\nperson(\"Nils\", \"Eling\", role = c(\"ctb\"),\nemail = \"nils.eling@dqbm.uzh.ch\",\ncomment = c(ORCID = \"0000-0002-4711-1176\")),\nperson(\"Fischer\", \"Jana\", role = c(\"ctb\"),\nemail = \"jana.fischerg@dqbm.uzh.ch\",\ncomment = c(ORCID = \"0000-0001-9047-8400\")))",
  "License": "GPL-3 + file LICENSE",
  "NeedsCompilation": "no",
  "biocViews": "ExperimentData, ExperimentHub, SingleCellData, SpatialData,\nHomo_sapiens_Data, ImmunoOncologyData, TechnologyData,\nPackageTypeData, ReproducibleResearch, Tissue",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/BodenmillerGroup/imcdatasets",
  "BugReports": "https://github.com/BodenmillerGroup/imcdatasets/issues",
  "BiocType": "ExperimentData",
  "RoxygenNote": "7.2.3",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "cmake libfftw3-dev libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev libgdal-dev gdal-bin\nlibgeos-dev make libharfbuzz-dev libmagick++-dev gsfonts\nlibicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev\nlibssl-dev libproj-dev libsqlite3-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-07-20 15:36:17 UTC",
  "RemoteUrl": "https://github.com/bioc/imcdatasets",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "ec19894d46eef300f5787d32e566a6d95446a3fe",
  "Packaged": {
    "Date": "2026-10-10 12:06:46 UTC",
    "User": "root"
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  "Author": "Nicolas Damond [aut] (ORCID: <https://orcid.org/0000-0003-3027-8989>),\nNathan Steenbuck [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2712-5359>),\nNils Eling [ctb] (ORCID: <https://orcid.org/0000-0002-4711-1176>),\nFischer Jana [ctb] (ORCID: <https://orcid.org/0000-0001-9047-8400>)",
  "Maintainer": "Nathan Steenbuck <nathan.steenbuck@uzh.ch>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "imcdatasets_1.20.1.tar.gz",
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  "_expires": "2027-01-18T13:13:01.000Z",
  "_created": "2026-10-10T12:06:46.000Z",
  "_published": "2026-10-12T08:53:13.695Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047490500",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
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    "warning": 0,
    "note": 3
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  "_upstream": "https://github.com/bioc/imcdatasets",
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    "author": "nathansteenbuck <nathan.steenbuck@gmail.com>",
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    "login": "nathansteenbuck",
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    "description": "PhD student in @BodenmillerGroup.\nTopics: Type 1 Diabetes, Spatial Biology.",
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  "_updates": [
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    "experimenthub",
    "singlecelldata",
    "spatialdata",
    "homo_sapiens_data",
    "immunooncologydata",
    "technologydata",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_searchresults": 44,
  "_datapkg": true,
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
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    "HochSchulz_2022_Melanoma",
    "IMMUcan_2022_CancerExample",
    "JacksonFischer_2020_BreastCancer",
    "listDatasets",
    "Zanotelli_2020_Spheroids"
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  "_help": [
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      "page": "Damond_2019_Pancreas",
      "title": "Obtain the Damond_2019_Pancreas dataset",
      "topics": [
        "Damond_2019_Pancreas"
      ]
    },
    {
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    },
    {
      "page": "listDatasets",
      "title": "List all available datasets",
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    },
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        "Available datasets",
        "Retrieving data",
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      "created": "2020-11-03 08:18:59",
      "modified": "2023-02-25 21:07:31",
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        "colData",
        "rowData",
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