{ "_id": "6acdf5f9a14063b82c3ad94a", "Package": "immunogenViewer", "Type": "Package", "Title": "Visualization and evaluation of protein immunogens", "Version": "1.6.0", "Authors@R": "c(person(\"Katharina\", \"Waury\", email = \"kathiwaury@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8570-7640\")))", "Description": "Plots protein properties and visualizes position of\npeptide immunogens within protein sequence. Allows evaluation\nof immunogens based on structural and functional annotations to\ninfer suitability for antibody-based methods aiming to detect\nnative proteins.", "License": "Apache License (>= 2)", "Encoding": "UTF-8", "Config/testthat/edition": "3", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "biocViews": "FeatureExtraction, Proteomics, Software, Visualization", "URL": "https://github.com/kathiwaury/immunogenViewer", "BugReports": "https://github.com/kathiwaury/immunogenViewer/issues", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 13:03:26 UTC", "RemoteUrl": "https://github.com/bioc/immunogenViewer", "RemoteRef": "RELEASE_3_23", "RemoteSha": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-13 08:45:58 UTC", "User": "root" }, "Author": "Katharina Waury [aut, cre] (ORCID:\n)", "Maintainer": "Katharina Waury ", "_user": "bioc-release", "_type": "src", "_file": "immunogenViewer_1.6.0.tar.gz", "_fileid": "https://r2.ropensci.org/b848badf4ebe69466363e526c22f2b7842c46b073298f57e389cdd8962a6996f", "_filesize": 322064, "_sha256": "b848badf4ebe69466363e526c22f2b7842c46b073298f57e389cdd8962a6996f", "_expires": "2027-01-21T09:12:23.000Z", "_created": "2026-10-13T08:45:58.000Z", "_published": "2026-10-13T09:12:25.328Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 7 }, "_upstream": "https://github.com/bioc/immunogenViewer", "_commit": { "id": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777381406 }, "_maintainer": { "name": "Katharina Waury", "email": "kathiwaury@gmail.com", "login": "kathiwaury", "description": "Bioinformatics researcher", "uuid": 47524923, "orcid": "0000-0002-8570-7640" }, "_distro": "resolute", "_jobs": [ { "job": 115209559774, "time": 168, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11799108092" }, { "job": 115209559933, "time": 300, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11799556504" }, { "job": 115209559769, "time": 312, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11800055710" }, { "job": 115209559927, "time": 201, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11800617095" }, { "job": 115209559866, "time": 157, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11799586851" }, { "job": 115208023426, "time": 234, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11799102605" }, { "job": 115209559925, "time": 111, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11799865327" }, { "job": 115209559871, "time": 186, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11799217584" }, { "job": 115209559822, "time": 179, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11799670701" }, { "job": 115209559939, "time": 157, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11799606087" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "UniProt.ws", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "DT", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.7.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.6.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "featureextraction", "proteomics", "software", "visualization" ], "_stars": 0, "_contributors": [ { "user": "kathiwaury", "count": 30, "uuid": 47524923 }, { "user": "gcroci2", "count": 4, "uuid": 55382553 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 237, "source": "https://www.bioconductor.org/packages/stats/bioc/immunogenViewer" }, "_devurl": "https://github.com/kathiwaury/immunogenviewer", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/immunogenViewer.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/kathiwaury/immunogenviewer", "_realowner": "bioc", "_cranurl": false, "_exports": [ "addImmunogen", "addImmunogenList", "evaluateImmunogen", "getProteinFeatures", "plotImmunogen", "plotProtein", "removeImmunogen", "renameImmunogen" ], "_help": [ { "page": "addImmunogen", "title": "Add an immunogen to the Protein DataFrame", "topics": [ "addImmunogen" ] }, { "page": "addImmunogenList", "title": "Add multiple immunogens to the Protein DataFrame", "topics": [ "addImmunogenList" ] }, { "page": "evaluateImmunogen", "title": "Create a summary DataFrame of the structural and functional properties of an immunogen", "topics": [ "evaluateImmunogen" ] }, { "page": "getProteinFeatures", "title": "Retrieve structural and functional features to create a protein DataFrame", "topics": [ "getProteinFeatures" ] }, { "page": "plotImmunogen", "title": "Plot protein features of one immunogen region", "topics": [ "plotImmunogen" ] }, { "page": "plotProtein", "title": "Plot protein features with immunogens highlighted", "topics": [ "plotProtein" ] }, { "page": "removeImmunogen", "title": "Remove an existing immunogen", "topics": [ "removeImmunogen" ] }, { "page": "renameImmunogen", "title": "Rename an existing immunogen", "topics": [ "renameImmunogen" ] } ], "_readme": "https://github.com/bioc/immunogenViewer/raw/RELEASE_3_23/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "farver", "fastmap", "filelock", "generics", "ggplot2", "glue", "gtable", "hms", "httr", "httr2", "IRanges", "isoband", "jsonlite", "KEGGREST", "labeling", "lifecycle", "magrittr", "memoise", "mime", "openssl", "patchwork", "pillar", "pkgconfig", "png", "prettyunits", "progress", "purrr", "R6", "RColorBrewer", "rjsoncons", "rlang", "RSQLite", "S4Vectors", "S7", "scales", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "UniProt.ws", "utf8", "vctrs", "viridisLite", "withr", "XVector" ], "_vignettes": [ { "source": "immunogenViewer_vignette.Rmd", "filename": "immunogenViewer_vignette.html", "title": "Using immunogenViewer to evaluate and choose antibodies", "author": "Katharina Waury", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "User guide", "Retrieving the protein features", "Adding immunogens to the protein dataframe", "Renaming an immunogen", "Removing an immunogen", "Visualizing the protein with the immunogens highlighted", "Visualizing a specific immunogen", "Evaluating the immunogens", "Important Notes", "References", "Session info" ], "created": "2024-05-01 11:44:07", "modified": "2025-02-08 20:13:33", "commits": 4 } ], "_score": 4.041392685158225, "_indexed": false, "_nocasepkg": "immunogenviewer", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/immunogenViewer", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.6.0", "date": "2026-10-13T08:49:16.000Z", "distro": "resolute", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/132d873fd156af1e0c2b1b92b07b5dfe52e0058ba7b7e3a2b9edc6838638272f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.6.1", "os": "linux", "version": "1.6.0", "date": "2026-10-13T08:49:30.000Z", "distro": "resolute", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/bf99bb7da510af52b79318d771b01ef7f1fbafa236aa5e8d0bddd9b86a810ebe", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.5.3", "os": "mac", "version": "1.6.0", "date": "2026-10-13T09:10:14.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/0adcd768687f4442272819f9b54876b7468a4245ddc6aa7745f2bc639aca1a42", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.6.1", "os": "mac", "version": "1.6.0", "date": "2026-10-13T08:53:35.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/73fecd4659b767684d62a656046ea4e87f5a6339c41d83657bbde1a2e4ae24cd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.6.0", "os": "wasm", "version": "1.6.0", "date": "2026-10-13T08:48:12.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/dfb08cbfd7088f72d3973022ad0332144f12183eaf2ca418b2684424cde71f54", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.7.0", "os": "win", "version": "1.6.0", "date": "2026-10-13T08:47:16.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/029ac45368585bf7a7d1387ebf822e68ec591827d2d6ae1954eaf03766aab8fb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.5.3", "os": "win", "version": "1.6.0", "date": "2026-10-13T08:47:13.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/0b14c47fd0fcfa1594563dfe68a0b01ccc358cd4332fba05792f2382424c1705", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" }, { "r": "4.6.1", "os": "win", "version": "1.6.0", "date": "2026-10-13T08:47:11.000Z", "commit": "b2551ff1fff07c8ccb88430bae5905711c22bef9", "fileid": "https://r2.ropensci.org/d7b42a74a266a8ba3109e3858adcd40e9234eb88f16d57f3acc42775f0df6a12", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38371072625" } ] }