{
  "_id": "6aaf85df3d719c1f8407e661",
  "Package": "iterativeBMAsurv",
  "Type": "Package",
  "Title": "The Iterative Bayesian Model Averaging (BMA) Algorithm For\nSurvival Analysis",
  "Version": "1.70.0",
  "Date": "2008-5-19",
  "Author": "Amalia Annest, University of Washington, Tacoma, WA Ka Yee\nYeung, University of Washington, Seattle, WA",
  "Maintainer": "Ka Yee Yeung <kayee@u.washington.edu>",
  "Description": "The iterative Bayesian Model Averaging (BMA) algorithm for\nsurvival analysis is a variable selection method for applying\nsurvival analysis to microarray data.",
  "License": "GPL (>= 2)",
  "URL": "http://expression.washington.edu/ibmasurv/protected",
  "biocViews": "Microarray",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:33:07 UTC",
  "RemoteUrl": "https://github.com/bioc/iterativeBMAsurv",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-20 07:00:09 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "iterativeBMAsurv_1.70.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/ee0761743ed30a8a533b186aa6369e2c471497c0564b20da5b3a7f0935f65e19",
  "_filesize": 385179,
  "_sha256": "ee0761743ed30a8a533b186aa6369e2c471497c0564b20da5b3a7f0935f65e19",
  "_expires": "2026-12-29T07:06:05.000Z",
  "_created": "2026-09-20T07:00:09.000Z",
  "_published": "2026-09-20T07:06:07.480Z",
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 15
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022",
  "_status": "success",
  "_upstream": "https://github.com/bioc/iterativeBMAsurv",
  "_commit": {
    "id": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379587
  },
  "_maintainer": {
    "name": "Ka Yee Yeung",
    "email": "kayee@u.washington.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 106038139481,
      "time": 180,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "10600498817"
    },
    {
      "job": 106038139443,
      "time": 324,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "10600474134"
    },
    {
      "job": 106038139499,
      "time": 225,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10600049695"
    },
    {
      "job": 106038139473,
      "time": 114,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "10600184395"
    },
    {
      "job": 106038139507,
      "time": 167,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10600314251"
    },
    {
      "job": 106037717793,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10600403903"
    },
    {
      "job": 106038139448,
      "time": 120,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10600620821"
    },
    {
      "job": 106038139502,
      "time": 106,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "10600109394"
    },
    {
      "job": 106038139500,
      "time": 105,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "10600620804"
    },
    {
      "job": 106038139514,
      "time": 104,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10599674770"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "BMA",
      "role": "Depends"
    },
    {
      "package": "leaps",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Depends"
    },
    {
      "package": "splines",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.71.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.70.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 438,
    "source": "https://www.bioconductor.org/packages/stats/bioc/iterativeBMAsurv"
  },
  "_mentions": 1,
  "_searchresults": 10,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/iterativeBMAsurv.html",
    "extra/manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "assignRiskGroup",
    "crossVal",
    "crossVal.final.calc",
    "crossVal.fold",
    "crossVal.init",
    "crossVal.run",
    "crossVal.tabulate",
    "imageplot.bma.mod",
    "imageplot.iterate.bma.surv",
    "iterateBMAinit",
    "iterateBMAsurv.train",
    "iterateBMAsurv.train.predict.assess",
    "iterateBMAsurv.train.wrapper",
    "predictBicSurv",
    "predictiveAssessCategory",
    "printTopGenes",
    "singleGeneCoxph"
  ],
  "_datasets": [
    {
      "name": "testCens",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "testCens",
      "file": "testCens.RData",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "testData",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "testData",
      "file": "testData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "X33310",
        "X28197",
        "X19373",
        "X16527",
        "X27415",
        "X24394",
        "X28531",
        "X27585",
        "X27766",
        "X26940",
        "X27731",
        "X17241",
        "X26586",
        "X27587",
        "X24396",
        "X27573",
        "X24298",
        "X33585",
        "X32054",
        "X19327",
        "X16164",
        "X31806",
        "X25054",
        "X33014",
        "X24489",
        "X19386",
        "X33166",
        "X34500",
        "X17280",
        "X26423",
        "X24657",
        "X16988",
        "X32904",
        "X17804",
        "X28792",
        "X17273",
        "X24816",
        "X33924",
        "X33840",
        "X27853",
        "X28325",
        "X26922",
        "X34728",
        "X27718",
        "X27764",
        "X17711",
        "X34680",
        "X33554",
        "X28178",
        "X24631",
        "X34729",
        "X29258",
        "X17902",
        "X27936",
        "X33850",
        "X26627",
        "X34574",
        "X27872",
        "X28040",
        "X27884",
        "X27841",
        "X27922",
        "X31787",
        "X22102",
        "X27730",
        "X22086",
        "X34015",
        "X33706",
        "X31968",
        "X31687",
        "X31981",
        "X28454",
        "X31453",
        "X19241",
        "X28718",
        "X27842",
        "X29224",
        "X32042",
        "X30258",
        "X19356",
        "X34488",
        "X22094",
        "X28003",
        "X26146",
        "X32212",
        "X32338",
        "X33558",
        "X27774",
        "X16817",
        "X26512",
        "X29650",
        "X31242",
        "X31471",
        "X33791",
        "X29911",
        "X33013",
        "X30209",
        "X16948",
        "X17154",
        "X27332"
      ],
      "rows": 36,
      "table": true,
      "tojson": true
    },
    {
      "name": "testSurv",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "testSurv",
      "file": "testSurv.RData",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "trainCens",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "trainCens",
      "file": "trainCens.RData",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "trainData",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "trainData",
      "file": "trainData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "X33310",
        "X28197",
        "X19373",
        "X16527",
        "X27415",
        "X24394",
        "X28531",
        "X27585",
        "X27766",
        "X26940",
        "X27731",
        "X17241",
        "X26586",
        "X27587",
        "X24396",
        "X27573",
        "X24298",
        "X33585",
        "X32054",
        "X19327",
        "X16164",
        "X31806",
        "X25054",
        "X33014",
        "X24489",
        "X19386",
        "X33166",
        "X34500",
        "X17280",
        "X26423",
        "X24657",
        "X16988",
        "X32904",
        "X17804",
        "X28792",
        "X17273",
        "X24816",
        "X33924",
        "X33840",
        "X27853",
        "X28325",
        "X26922",
        "X34728",
        "X27718",
        "X27764",
        "X17711",
        "X34680",
        "X33554",
        "X28178",
        "X24631",
        "X34729",
        "X29258",
        "X17902",
        "X27936",
        "X33850",
        "X26627",
        "X34574",
        "X27872",
        "X28040",
        "X27884",
        "X27841",
        "X27922",
        "X31787",
        "X22102",
        "X27730",
        "X22086",
        "X34015",
        "X33706",
        "X31968",
        "X31687",
        "X31981",
        "X28454",
        "X31453",
        "X19241",
        "X28718",
        "X27842",
        "X29224",
        "X32042",
        "X30258",
        "X19356",
        "X34488",
        "X22094",
        "X28003",
        "X26146",
        "X32212",
        "X32338",
        "X33558",
        "X27774",
        "X16817",
        "X26512",
        "X29650",
        "X31242",
        "X31471",
        "X33791",
        "X29911",
        "X33013",
        "X30209",
        "X16948",
        "X17154",
        "X27332"
      ],
      "rows": 65,
      "table": true,
      "tojson": true
    },
    {
      "name": "trainSurv",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "object": "trainSurv",
      "file": "trainSurv.RData",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "iterativeBMAsurv-package",
      "title": "The Iterative Bayesian Model Averaging (BMA) algorithm for survival analysis",
      "topics": [
        "iterativeBMAsurv-package",
        "iterativeBMAsurv"
      ]
    },
    {
      "page": "crossVal",
      "title": "Cross Validation for Iterative Bayesian Model Averaging",
      "topics": [
        "crossVal"
      ]
    },
    {
      "page": "imageplot.iterate.bma.surv",
      "title": "An image plot visualization tool",
      "topics": [
        "imageplot.iterate.bma.surv"
      ]
    },
    {
      "page": "iterateBMAsurv.train",
      "title": "Iterative Bayesian Model Averaging: training",
      "topics": [
        "iterateBMAsurv.train"
      ]
    },
    {
      "page": "iterateBMAsurv.train.predict.assess",
      "title": "Iterative Bayesian Model Averaging: training, prediction, assessment",
      "topics": [
        "iterateBMAsurv.train.predict.assess"
      ]
    },
    {
      "page": "iterateBMAsurv.train.wrapper",
      "title": "Iterative Bayesian Model Averaging: training",
      "topics": [
        "iterateBMAsurv.train.wrapper"
      ]
    },
    {
      "page": "predictBicSurv",
      "title": "Predicted patient risk scores from iterative Bayesian Model Averaging",
      "topics": [
        "predictBicSurv"
      ]
    },
    {
      "page": "predictiveAssessCategory",
      "title": "Risk Groups: assignment of patient test samples",
      "topics": [
        "predictiveAssessCategory"
      ]
    },
    {
      "page": "printTopGenes",
      "title": "Write a training set including the top-ranked G variables from a sorted matrix to file",
      "topics": [
        "printTopGenes"
      ]
    },
    {
      "page": "singleGeneCoxph",
      "title": "Univariate Cox Proportional Hazards Model for selecting top log-ranked predicitve variables",
      "topics": [
        "singleGeneCoxph"
      ]
    },
    {
      "page": "testCens",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "testCens"
      ]
    },
    {
      "page": "testData",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "testData"
      ]
    },
    {
      "page": "testSurv",
      "title": "Sample Test Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "testSurv"
      ]
    },
    {
      "page": "trainCens",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "trainCens"
      ]
    },
    {
      "page": "trainData",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "trainData"
      ]
    },
    {
      "page": "trainSurv",
      "title": "Sample Training Data for the Iterative BMA Algorithm for Survival Analysis",
      "topics": [
        "trainSurv"
      ]
    }
  ],
  "_rundeps": [
    "BMA",
    "DEoptimR",
    "inline",
    "lattice",
    "leaps",
    "Matrix",
    "mvtnorm",
    "pcaPP",
    "robustbase",
    "rrcov",
    "survival"
  ],
  "_vignettes": [
    {
      "source": "iterativeBMAsurv.Rnw",
      "filename": "iterativeBMAsurv.pdf",
      "title": "The Iterative Bayesian Model Averaging Algorithm For Survival Analysis",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Some examples"
      ],
      "created": "2013-11-01 20:04:41",
      "modified": "2013-11-01 20:04:41",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "iterativebmasurv",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/iterativeBMAsurv",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.70.0",
      "date": "2026-09-20T07:05:07.000Z",
      "distro": "resolute",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/6277fcccbf96dca93df68545c72e7d1b105832251eb26d653461b1e2e95bbe89",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.70.0",
      "date": "2026-09-20T07:03:22.000Z",
      "distro": "resolute",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/a75f95ef7c78df1617974f22add00486959b0b3283a469d415312ce36d217a02",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.70.0",
      "date": "2026-09-20T07:01:46.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/b41ebd503731704869213687019ad441c42d0672490295f40981e6736f25a2f1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.70.0",
      "date": "2026-09-20T07:02:15.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/648c8ce96b9a0fbae6c40affc653f093ff4e12affc35b82432665bb7bff2b0de",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.70.0",
      "date": "2026-09-20T07:02:24.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/b31c028e38cf6437ae85e8f8f0e3b35c25db8984575ec0a9c3092b214afdf943",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.70.0",
      "date": "2026-09-20T07:01:09.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/4769abd58a6ee332332c70d1a831f1e92bf5c3710e68c6455cb17a1cc344b3d7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.70.0",
      "date": "2026-09-20T07:01:10.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/9ddb74d157b95a653829a56f560ba4c9efe5e8d4055676fb4fc9d8b4f230820f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.70.0",
      "date": "2026-09-20T07:01:11.000Z",
      "commit": "82f5f2cb9362e25abf42b027beb0d7b876d820db",
      "fileid": "https://r2.ropensci.org/179127efa34e09f034e190dc4a1a734df7763ab5d55298287bc06a4edfa89ec6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35495508022"
    }
  ]
}