{
  "_id": "6aca2021fe5cc25786e84f9b",
  "Package": "microbiomeDataSets",
  "Title": "Experiment Hub based microbiome datasets",
  "Version": "1.20.0",
  "Authors@R": "c(\nperson(\"Leo\", \"Lahti\", role = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0001-5537-637X\"),\nemail = \"leo.lahti@iki.fi\"),\nperson(given = \"Felix G.M.\", family = \"Ernst\", role = c(\"aut\"),\nemail = \"felix.gm.ernst@outlook.com\",\ncomment = c(ORCID = \"0000-0001-5064-0928\")),\nperson(given = \"Sudarshan\", \"Shetty\", role = c(\"aut\"),\nemail = \"sudarshanshetty9@gmail.com\",\ncomment = c(ORCID = \"0000-0001-7280-9915\")),\nperson(given = \"Chouaib\", family = \"Benchraka\", role = c(\"ctb\"),\nemail = \"chouaib.benchraka@utu.fi\",\ncomment = c(ORCID = \"0000-0002-1167-7848\")),\nperson(given = \"Yagmur\", family = \"Simsek\", role = c(\"ctb\"))\n)",
  "Description": "microbiomeDataSets is a collection of microbiome datasets\nloaded from Bioconductor'S ExperimentHub infrastructure. The\ndatasets serve as reference for workflows and vignettes\npublished adjacent to the microbiome analysis tools on\nBioconductor. Additional datasets can be added overtime and\nadditions from authors are welcome.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "biocViews": "ExperimentHub, ExperimentData, MicrobiomeData,\nSequencingData",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:34:48 UTC",
  "RemoteUrl": "https://github.com/bioc/microbiomeDataSets",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "f7f97397ee43e25f4034d0def198369a99109ffb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:14:49 UTC",
    "User": "root"
  },
  "Author": "Leo Lahti [cre, aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>),\nFelix G.M. Ernst [aut] (ORCID: <https://orcid.org/0000-0001-5064-0928>),\nSudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>),\nChouaib Benchraka [ctb] (ORCID:\n<https://orcid.org/0000-0002-1167-7848>),\nYagmur Simsek [ctb]",
  "Maintainer": "Leo Lahti <leo.lahti@iki.fi>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "microbiomeDataSets_1.20.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/8e4a6ef253d5219ed036e09f15bac85499419fc67335518dd6d3e55b8f93d49f",
  "_filesize": 131762,
  "_sha256": "8e4a6ef253d5219ed036e09f15bac85499419fc67335518dd6d3e55b8f93d49f",
  "_expires": "2027-01-18T11:23:11.000Z",
  "_created": "2026-10-10T11:14:49.000Z",
  "_published": "2026-10-10T11:23:12.914Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047493175",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 3
  },
  "_upstream": "https://github.com/bioc/microbiomeDataSets",
  "_commit": {
    "id": "f7f97397ee43e25f4034d0def198369a99109ffb",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379688
  },
  "_maintainer": {
    "name": "Leo Lahti",
    "email": "leo.lahti@iki.fi",
    "login": "antagomir",
    "bluesky": "@antagomir.bsky.social",
    "linkedin": "in/leo-lahti-b942ba3",
    "description": "Prof. in Data Science. Department of Computing, University of Turku, Finland. Complex natural and social systems.",
    "uuid": 1228382,
    "orcid": "0000-0001-5537-637X"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114200687593,
      "time": 170,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11668387330"
    },
    {
      "job": 114200687564,
      "time": 434,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11668217865"
    },
    {
      "job": 114200687619,
      "time": 401,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11667813321"
    },
    {
      "job": 114199912151,
      "time": 268,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11667847393"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Depends"
    },
    {
      "package": "TreeSummarizedExperiment",
      "role": "Depends"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "ExperimentHub",
      "role": "Imports"
    },
    {
      "package": "Biostrings",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "SingleCellExperiment",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.21.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.20.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimenthub",
    "experimentdata",
    "microbiomedata",
    "sequencingdata",
    "datapkg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 54,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/microbiomeDataSets.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "artificialgut",
    "availableDataSets",
    "baboongut",
    "dietswap",
    "GrieneisenTSData",
    "LahtiMData",
    "LahtiMLData",
    "OKeefeDSData",
    "peerj32",
    "qa10934",
    "SilvermanAGutData",
    "SongQAData",
    "SprockettTHData"
  ],
  "_help": [
    {
      "page": "microbiomeDataSets-package",
      "title": "Microbiome data sets",
      "topics": [
        "microbiomeDataSets-package"
      ]
    },
    {
      "page": "availableDataSets",
      "title": "Load available microbiome data sets",
      "topics": [
        "availableDataSets"
      ]
    },
    {
      "page": "GrieneisenTSData",
      "title": "Retrieve GrieneisenTS data",
      "topics": [
        "baboongut",
        "GrieneisenTSData"
      ]
    },
    {
      "page": "LahtiMLData",
      "title": "Obtain the Lahti Microbiome and Lipid data",
      "topics": [
        "LahtiMData",
        "LahtiMLData",
        "peerj32"
      ]
    },
    {
      "page": "OKeefeDSData",
      "title": "Obtain the O'Keefe diet swap microbiome data",
      "topics": [
        "dietswap",
        "OKeefeDSData"
      ]
    },
    {
      "page": "SilvermanAGutData",
      "title": "Obtain the Silverman Artificial Gut data",
      "topics": [
        "artificialgut",
        "SilvermanAGutData"
      ]
    },
    {
      "page": "SongQAData",
      "title": "Obtain the Song quality assurance dataset",
      "topics": [
        "qa10934",
        "SongQAData"
      ]
    },
    {
      "page": "SprockettTHData",
      "title": "Obtain the Sprockett Tsimane Horticulturalists data",
      "topics": [
        "SprockettTHData"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/microbiomeDataSets/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "ape",
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocParallel",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "digest",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "glue",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lambda.r",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "MultiAssayExperiment",
    "nlme",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SingleCellExperiment",
    "snow",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytree",
    "treeio",
    "TreeSummarizedExperiment",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml",
    "yulab.utils"
  ],
  "_vignettes": [
    {
      "source": "microbiomeDataSets.Rmd",
      "filename": "microbiomeDataSets.html",
      "title": "microbiomeDataSets",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Microbiome example data sets"
      ],
      "created": "2020-12-16 20:18:29",
      "modified": "2024-06-23 10:11:58",
      "commits": 14
    }
  ],
  "_score": 4.732393759822969,
  "_indexed": false,
  "_nocasepkg": "microbiomedatasets",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/microbiomeDataSets",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.20.0",
      "date": "2026-10-10T11:19:01.000Z",
      "distro": "resolute",
      "commit": "f7f97397ee43e25f4034d0def198369a99109ffb",
      "fileid": "https://r2.ropensci.org/e61d80b2629b352908b6811f8324491ddb4285cb0e84710d639cb41a301b302d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047493175"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.20.0",
      "date": "2026-10-10T11:18:26.000Z",
      "distro": "resolute",
      "commit": "f7f97397ee43e25f4034d0def198369a99109ffb",
      "fileid": "https://r2.ropensci.org/79fb328b271785c1329561e7c3c8711601e009c24e24faf787609a9e0963d398",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047493175"
    }
  ]
}