{
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  "Package": "multiMiR",
  "Title": "Integration of multiple microRNA-target databases with their\ndisease and drug associations",
  "Version": "1.34.0",
  "Authors@R": "c(\nperson(\"Yuanbin\", \"Ru\", email = \"ruyuanbin@gmail.com\", role = c(\"aut\")),\nperson(\"Matt\", \"Mulvahill\", email = \"matt.mulvahill@gmail.com\", role = c(\"aut\")),\nperson(\"Spencer\", \"Mahaffey\", email = \"Spencer.Mahaffey@cuanschutz.edu\", role = c(\"cre\",\"aut\")),\nperson(\"Katerina\", \"Kechris\", email = \"Katerina.Kechris@ucdenver.edu\", role = c(\"aut\", \"cph\", \"ths\")))",
  "Description": "A collection of microRNAs/targets from external resources,\nincluding validated microRNA-target databases (miRecords,\nmiRTarBase and TarBase), predicted microRNA-target databases\n(DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA\nand TargetScan) and microRNA-disease/drug databases\n(miR2Disease, Pharmaco-miR VerSe and PhenomiR).",
  "URL": "https://github.com/KechrisLab/multiMiR",
  "BugReports": "https://github.com/KechrisLab/multiMiR/issues",
  "VignetteBuilder": "knitr",
  "License": "MIT + file LICENSE",
  "NeedsCompilation": "no",
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  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:46:27 UTC",
  "RemoteUrl": "https://github.com/bioc/multiMiR",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "915c84cede1039db797fa8925c4bf9835542bf01",
  "Packaged": {
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    "User": "root"
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  "Author": "Yuanbin Ru [aut],\nMatt Mulvahill [aut],\nSpencer Mahaffey [cre, aut],\nKaterina Kechris [aut, cph, ths]",
  "Maintainer": "Spencer Mahaffey <Spencer.Mahaffey@cuanschutz.edu>",
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    "microrna-sequence",
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  "_devurl": "https://github.com/kechrislab/multimir",
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  "_realowner": "bioc",
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    "get.multimir",
    "keys",
    "keytypes",
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    "list.multimir",
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    "multimir_dbSchema",
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    "search_multimir",
    "search.multimir",
    "select",
    "show",
    "table_types",
    "tables_wo_target",
    "validated_tables"
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      "title": "Functions defining the category each table belongs to.",
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        "all_tables",
        "all_tables,",
        "conserved_tables",
        "diseasedrug_tables",
        "diseasedrug_tables,",
        "predicted_tables",
        "predicted_tables,",
        "reverse_table_lookup",
        "tables_wo_target",
        "tables_wo_target,",
        "table_types",
        "validated_tables",
        "validated_tables,"
      ]
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      "title": "Get microRNA-target Interactions from the multiMiR Package",
      "topics": [
        "get.multimir",
        "get_multimir"
      ]
    },
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      "title": "List microRNAs, Genes, Drugs Or Diseases in the multiMiR Package",
      "topics": [
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        "list_multimir"
      ]
    },
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      "title": "S4 constructor and methods for object returned by 'get_multimir()'.",
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        "columns,mmquery_bioc-method",
        "keys,mmquery_bioc-method",
        "keytypes,mmquery_bioc-method",
        "mmquery_bioc-class",
        "select,mmquery_bioc-method",
        "show,mmquery_bioc-method"
      ]
    },
    {
      "page": "multiMiR",
      "title": "MultiMiR: R package for accessing the multiMiR database",
      "topics": [
        "multiMiR-package",
        "multiMiR",
        "multimir"
      ]
    },
    {
      "page": "multimir_dbInfo",
      "title": "Collect Information About the Web Server And Database of the multiMiR Package",
      "topics": [
        "multimir_dbCount",
        "multimir_dbInfo",
        "multimir_dbInfoVersions",
        "multimir_dbSchema",
        "multimir_dbTables"
      ]
    },
    {
      "page": "multimir_switchDBVersion",
      "title": "Manage Database Version to use",
      "topics": [
        "multimir_switchDBVersion"
      ]
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      "title": "Search the multiMiR Database Given a MySQL Query",
      "topics": [
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        "search_multimir"
      ]
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      "filename": "multiMiR.html",
      "title": "The multiMiR user's guide",
      "author": "Yuanbin Ru, Matt Mulvahill, Spencer Mahaffey, Katerina Kechris",
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        "Getting to know the multiMiR database",
        "Changes to package:multiMiR - S3 and S4 classes",
        "List miRNAs, genes, drugs and diseases in the multiMiR database",
        "Use get_multimir() to query the multiMiR database",
        "Example of multiMiR in a Bioconductor workflow",
        "Examples of multiMiR queries",
        "Example 1: Retrieve all validated target genes of a given miRNA",
        "Example 2: Retrieve miRNA-target interactions associated with a given drug or disease",
        "Example 3: Select miRNAs predicted to target a gene",
        "Example 4: Select miRNA(s) predicted to target most, if not all, of the genes of interest",
        "Example 5: Retrieve interactions between a set of miRNAs and a set of genes",
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