{
  "_id": "6abe45bd99f7aa8c6aa54999",
  "Package": "ndexr",
  "Type": "Package",
  "Title": "NDEx R client library",
  "Version": "1.34.0",
  "Date": "2018-04-27",
  "Authors@R": "c(\nperson(given = \"Florian\", family = \"Auer\",\nrole = c(\"cre\",\"aut\"),\nemail = \"florian.auer@informatik.uni-augsburg.de\",\ncomment = c(ORCID = \"0000-0002-5320-8900\")),\nperson(given = \"Frank\", family = \"Kramer\",\nrole = c(\"ctb\"),\nemail = \"frank.kramer@informatik.uni-augsburg.de\"),\nperson(given = \"Alex\", family = \"Ishkin\",\nrole = c(\"ctb\"),\nemail = \"aleksandr.ishkin@thomsonreuters.com\"),\nperson(given = \"Dexter\", family = \"Pratt\",\nrole = c(\"ctb\"),\nemail = \"depratt@ucsc.edu\"))",
  "Description": "This package offers an interface to NDEx servers, e.g. the\npublic server at http://ndexbio.org/. It can retrieve and save\nnetworks via the API. Networks are offered as RCX object and as\nigraph representation.",
  "License": "BSD_3_clause + file LICENSE",
  "RoxygenNote": "7.2.3",
  "Encoding": "UTF-8",
  "biocViews": "Pathways, DataImport, Network",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/frankkramer-lab/ndexr",
  "BugReports": "https://github.com/frankkramer-lab/ndexr/issues",
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  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:45:44 UTC",
  "RemoteUrl": "https://github.com/bioc/ndexr",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "00704c8bf187cce76de794ee2d47eb3051b5ba24",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Florian Auer [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-5320-8900>),\nFrank Kramer [ctb],\nAlex Ishkin [ctb],\nDexter Pratt [ctb]",
  "Maintainer": "Florian Auer <florian.auer@informatik.uni-augsburg.de>",
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  "_type": "src",
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  "_created": "2026-10-01T11:23:21.000Z",
  "_published": "2026-10-01T11:36:29.711Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 11
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36854609371",
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  "_upstream": "https://github.com/bioc/ndexr",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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    "name": "Florian Auer",
    "email": "florian.auer@informatik.uni-augsburg.de",
    "login": "florian-j-auer",
    "description": "",
    "uuid": 20659040,
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  "_dependencies": [
    {
      "package": "RCX",
      "role": "Depends"
    },
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      "package": "httr",
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  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "week": "2025-44",
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    },
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  "_bioc": [
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      "version": "1.35.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
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  "_topics": [
    "pathways",
    "dataimport",
    "network"
  ],
  "_stars": 9,
  "_contributors": [
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
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    "source": "https://www.bioconductor.org/packages/stats/bioc/ndexr"
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  "_devurl": "https://github.com/frankkramer-lab/ndexr",
  "_searchresults": 55,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/ndexr.html",
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
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  ],
  "_homeurl": "https://github.com/frankkramer-lab/ndexr",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "ndex_config",
    "ndex_connect",
    "ndex_create_group",
    "ndex_create_network",
    "ndex_create_user",
    "ndex_delete_group",
    "ndex_delete_network",
    "ndex_delete_user",
    "ndex_find_groups",
    "ndex_find_networks",
    "ndex_find_user_byId",
    "ndex_find_user_byName",
    "ndex_find_users",
    "ndex_get_group",
    "ndex_get_network",
    "ndex_group_delete_membership",
    "ndex_group_list_networks",
    "ndex_group_list_users",
    "ndex_group_network_get_permission",
    "ndex_group_set_membership",
    "ndex_network_aspect_get_metadata",
    "ndex_network_delete_permission",
    "ndex_network_get_aspect",
    "ndex_network_get_metadata",
    "ndex_network_get_permission",
    "ndex_network_get_provenance",
    "ndex_network_get_summary",
    "ndex_network_set_systemProperties",
    "ndex_network_update_aspect",
    "ndex_network_update_permission",
    "ndex_network_update_profile",
    "ndex_update_group",
    "ndex_update_network",
    "ndex_update_user",
    "ndex_user_change_password",
    "ndex_user_forgot_password",
    "ndex_user_get_networksummary",
    "ndex_user_get_showcase",
    "ndex_user_list_groups",
    "ndex_user_list_permissions",
    "ndex_user_mail_password",
    "ndex_user_show_group",
    "ndex_user_show_permission",
    "ndex_verify_user"
  ],
  "_help": [
    {
      "page": "ndexr-package",
      "title": "NDEx R client library",
      "topics": [
        "ndexr-package",
        "ndexr"
      ]
    },
    {
      "page": "ndex_config",
      "title": "NDEx server api configuration",
      "topics": [
        "ndex_config"
      ]
    },
    {
      "page": "ndex_connect",
      "title": "Connect to NDEx REST API",
      "topics": [
        "ndex_connect"
      ]
    },
    {
      "page": "ndex_create_group",
      "title": "Create Group",
      "topics": [
        "ndex_create_group"
      ]
    },
    {
      "page": "ndex_create_network",
      "title": "Create a Network at a server from RCX data",
      "topics": [
        "ndex_create_network"
      ]
    },
    {
      "page": "ndex_create_user",
      "title": "Create a user",
      "topics": [
        "ndex_create_user"
      ]
    },
    {
      "page": "ndex_delete_group",
      "title": "Delete Group",
      "topics": [
        "ndex_delete_group"
      ]
    },
    {
      "page": "ndex_delete_network",
      "title": "Delete a network",
      "topics": [
        "ndex_delete_network"
      ]
    },
    {
      "page": "ndex_delete_user",
      "title": "Delete User",
      "topics": [
        "ndex_delete_user"
      ]
    },
    {
      "page": "ndex_find_groups",
      "title": "Search groups in NDEx",
      "topics": [
        "ndex_find_groups"
      ]
    },
    {
      "page": "ndex_find_networks",
      "title": "Search networks in NDEx (by description)",
      "topics": [
        "ndex_find_networks"
      ]
    },
    {
      "page": "ndex_find_user_byId",
      "title": "Get User By UUID",
      "topics": [
        "ndex_find_user_byId"
      ]
    },
    {
      "page": "ndex_find_user_byName",
      "title": "Get User By Name",
      "topics": [
        "ndex_find_user_byName"
      ]
    },
    {
      "page": "ndex_find_users",
      "title": "Search user in NDEx",
      "topics": [
        "ndex_find_users"
      ]
    },
    {
      "page": "ndex_get_group",
      "title": "Get a Group",
      "topics": [
        "ndex_get_group"
      ]
    },
    {
      "page": "ndex_get_network",
      "title": "Get complete network",
      "topics": [
        "ndex_get_network"
      ]
    },
    {
      "page": "ndex_group_delete_membership",
      "title": "Remove a Group Member",
      "topics": [
        "ndex_group_delete_membership"
      ]
    },
    {
      "page": "ndex_group_list_networks",
      "title": "Get Network Permissions of a Group",
      "topics": [
        "ndex_group_list_networks"
      ]
    },
    {
      "page": "ndex_group_list_users",
      "title": "Get Members of a Group",
      "topics": [
        "ndex_group_list_users"
      ]
    },
    {
      "page": "ndex_group_network_get_permission",
      "title": "Get Group Permission for a Specific Network",
      "topics": [
        "ndex_group_network_get_permission"
      ]
    },
    {
      "page": "ndex_group_set_membership",
      "title": "Add or Update a Group Member",
      "topics": [
        "ndex_group_set_membership"
      ]
    },
    {
      "page": "ndex_network_aspect_get_metadata",
      "title": "Get the Metadata Associated with a Network UUID",
      "topics": [
        "ndex_network_aspect_get_metadata"
      ]
    },
    {
      "page": "ndex_network_delete_permission",
      "title": "Delete Network Permission",
      "topics": [
        "ndex_network_delete_permission"
      ]
    },
    {
      "page": "ndex_network_get_aspect",
      "title": "Get a Network Aspect As CX",
      "topics": [
        "ndex_network_get_aspect"
      ]
    },
    {
      "page": "ndex_network_get_metadata",
      "title": "Get Network CX Metadata Collection",
      "topics": [
        "ndex_network_get_metadata"
      ]
    },
    {
      "page": "ndex_network_get_permission",
      "title": "Get All Permissions on a Network",
      "topics": [
        "ndex_network_get_permission"
      ]
    },
    {
      "page": "ndex_network_get_provenance",
      "title": "Get Network Provenance",
      "topics": [
        "ndex_network_get_provenance"
      ]
    },
    {
      "page": "ndex_network_get_summary",
      "title": "Get NetworkSummary by Network UUID",
      "topics": [
        "ndex_network_get_summary"
      ]
    },
    {
      "page": "ndex_network_set_systemProperties",
      "title": "Set Network System Properties",
      "topics": [
        "ndex_network_set_systemProperties"
      ]
    },
    {
      "page": "ndex_network_update_aspect",
      "title": "Update an Aspect of a Network",
      "topics": [
        "ndex_network_update_aspect"
      ]
    },
    {
      "page": "ndex_network_update_permission",
      "title": "Update Network Permission",
      "topics": [
        "ndex_network_update_permission"
      ]
    },
    {
      "page": "ndex_network_update_profile",
      "title": "Update Network Profile",
      "topics": [
        "ndex_network_update_profile"
      ]
    },
    {
      "page": "ndex_update_group",
      "title": "Update Group",
      "topics": [
        "ndex_update_group"
      ]
    },
    {
      "page": "ndex_update_network",
      "title": "Update an Entire Network as CX",
      "topics": [
        "ndex_update_network"
      ]
    },
    {
      "page": "ndex_update_user",
      "title": "Update User",
      "topics": [
        "ndex_update_user"
      ]
    },
    {
      "page": "ndex_user_change_password",
      "title": "Change Password",
      "topics": [
        "ndex_user_change_password"
      ]
    },
    {
      "page": "ndex_user_forgot_password",
      "title": "Forgot Password",
      "topics": [
        "ndex_user_forgot_password"
      ]
    },
    {
      "page": "ndex_user_get_networksummary",
      "title": "Get User's Account Page Networks",
      "topics": [
        "ndex_user_get_networksummary"
      ]
    },
    {
      "page": "ndex_user_get_showcase",
      "title": "Get User's Showcase Networks",
      "topics": [
        "ndex_user_get_showcase"
      ]
    },
    {
      "page": "ndex_user_list_groups",
      "title": "Get User's Group Memberships",
      "topics": [
        "ndex_user_list_groups"
      ]
    },
    {
      "page": "ndex_user_list_permissions",
      "title": "Get User's Network Permissions",
      "topics": [
        "ndex_user_list_permissions"
      ]
    },
    {
      "page": "ndex_user_mail_password",
      "title": "Email New Password",
      "topics": [
        "ndex_user_mail_password"
      ]
    },
    {
      "page": "ndex_user_show_group",
      "title": "Get User's Membership in Group",
      "topics": [
        "ndex_user_show_group"
      ]
    },
    {
      "page": "ndex_user_show_permission",
      "title": "Get User's Permission for Network",
      "topics": [
        "ndex_user_show_permission"
      ]
    },
    {
      "page": "ndex_verify_user",
      "title": "Verify a User",
      "topics": [
        "ndex_verify_user"
      ]
    }
  ],
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      "filename": "ndexr-vignette.html",
      "title": "NDExR - R implementaion for NDEx server API",
      "author": "Florian J. Auer, Zaynab Hammoud, Frank Kramer",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Installation",
        "Installation from Bioconductor",
        "Installation from GitHub",
        "Quick Start",
        "Connect to a server",
        "Find Networks",
        "Simple network operations",
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        "NDEx Network properties",
        "API Compatibility with NDEx versions",
        "Server REST API configuration"
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      "created": "2017-04-03 09:36:13",
      "modified": "2022-10-27 14:48:01",
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