{ "_id": "6aca1fe8fe5cc25786e84f60", "Package": "nullrangesData", "Title": "ExperimentHub datasets for the nullranges package", "Version": "1.18.0", "Authors@R": "c(\nperson(\"Michael\", \"Love\",\nrole = c(\"aut\", \"cre\"),\nemail = \"michaelisaiahlove@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8401-0545\")),\nperson(\"Wancen\", \"Mu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-5061-7581\")),\nperson(\"Eric\", \"Davis\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4051-3217\")),\nperson(\"Mikhail\", \"Dozmorov\", role = c(\"aut\"))\n)", "Description": "Provides datasets for the nullranges package vignette, in\nparticular example datasets for DNase hypersensitivity sites\n(DHS), CTCF binding sites, and CTCF genomic interactions. These\nare used to demonstrate generation of null hypothesis feature\nsets, either through block bootstrapping or matching, in the\nnullranges vignette. For more details, see the data object man\npages, and the R scripts for object construction provided\nwithin the package.", "biocViews": "ExperimentHub, Homo_sapiens_Data, SequencingData,\nChIPSeqData, ENCODE", "License": "GPL-3", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.1", "LazyData": "true", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:35:48 UTC", "RemoteUrl": "https://github.com/bioc/nullrangesData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "00087cd56633816953080e2a54535772b4794be1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:16:05 UTC", "User": "root" }, "Author": "Michael Love [aut, cre] (ORCID:\n),\nWancen Mu [aut] (ORCID: ),\nEric Davis [aut] (ORCID: ),\nMikhail Dozmorov [aut]", "Maintainer": "Michael Love ", "_user": "bioc-release", "_type": "src", "_file": "nullrangesData_1.18.0.tar.gz", "_fileid": "https://r2.ropensci.org/54106ffa3fe35e95c96d489e69906c38880e87622a385f42e21334995280f0b1", "_filesize": 4204133, "_sha256": "54106ffa3fe35e95c96d489e69906c38880e87622a385f42e21334995280f0b1", "_expires": "2027-01-18T11:22:14.000Z", "_created": "2026-10-10T11:16:05.000Z", "_published": "2026-10-10T11:22:16.079Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047560460", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 1, "note": 7 }, "_upstream": "https://github.com/bioc/nullrangesData", "_commit": { "id": "00087cd56633816953080e2a54535772b4794be1", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379748 }, "_maintainer": { "name": "Michael Love", "email": "michaelisaiahlove@gmail.com", "login": "mikelove", "mastodon": "@mikelove@genomic.social", "orcid": "0000-0001-8401-0545", "description": "Genetics & Biostatistics at UNC-Chapel Hill. R/Bioconductor developer", "uuid": 69203 }, "_distro": "resolute", "_jobs": [ { "job": 114200893177, "time": 164, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11668571268" }, { "job": 114200893146, "time": 297, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "11668796126" }, { "job": 114200893208, "time": 306, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11668497547" }, { "job": 114200119582, "time": 270, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667987497" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "ExperimentHub", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "InteractionSet", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.19.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.18.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimenthub", "homo_sapiens_data", "sequencingdata", "chipseqdata", "encode", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 10, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/nullrangesData.html" ], "_cranurl": false, "_exports": [ "DHSA549Hg38", "hg19_10kb_bins", "hg19_10kb_ctcfBoundBinPairs" ], "_datasets": [ { "name": "sc_promoter", "title": "Chromium Single Cell Multiome ATAC + Gene Expression assay", "object": "sc_promoter", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "sc_rna", "title": "Chromium Single Cell Multiome ATAC + Gene Expression assay", "object": "sc_rna", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "DHSA549Hg38", "title": "DNase hypersensitivity (DHS) peaks in A549 cell example data, lifted to hg38", "topics": [ "DHSA549Hg38" ] }, { "page": "hg19_10kb_bins", "title": "10Kb bins from hg19 with GM12878 metadata annotation features", "topics": [ "hg19_10kb_bins" ] }, { "page": "hg19_10kb_ctcfBoundBinPairs", "title": "CTCF-bound 10Kb paired genomic interactions", "topics": [ "hg19_10kb_ctcfBoundBinPairs" ] }, { "page": "nullrangesData", "title": "ExperimentHub datasets for the nullranges package", "topics": [ "nullrangesData" ] }, { "page": "sc_promoter", "title": "Chromium Single Cell Multiome ATAC + Gene Expression assay", "topics": [ "sc_promoter" ] }, { "page": "sc_rna", "title": "Chromium Single Cell Multiome ATAC + Gene Expression assay", "topics": [ "sc_rna" ] } ], "_rundeps": [ "abind", "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "DelayedArray", "dplyr", "ExperimentHub", "fastmap", "filelock", "generics", "GenomicRanges", "glue", "httr", "httr2", "InteractionSet", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "Rcpp", "rlang", "RSQLite", "S4Arrays", "S4Vectors", "Seqinfo", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_vignettes": [ { "source": "nullrangesData.Rmd", "filename": "nullrangesData.html", "title": "nullrangesData package", "engine": "knitr::rmarkdown", "headings": [ "Session information" ], "created": "2021-09-22 00:26:40", "modified": "2023-02-03 18:17:44", "commits": 3 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "nullrangesdata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/nullrangesData", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.18.0", "date": "2026-10-10T11:19:32.000Z", "distro": "resolute", "commit": "00087cd56633816953080e2a54535772b4794be1", "fileid": "https://r2.ropensci.org/94ef5070a827d1d9e0fc3080a3433410d924469d67b022d89cb5a82b3167fa36", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047560460" }, { "r": "4.6.1", "os": "linux", "version": "1.18.0", "date": "2026-10-10T11:19:41.000Z", "distro": "resolute", "commit": "00087cd56633816953080e2a54535772b4794be1", "fileid": "https://r2.ropensci.org/2f4452db63c5433c65505b41329abb6d94f6ef4aec2515753cd6ef8967397f0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047560460" } ] }