{
  "_id": "6a25139b4b233be19838a9f5",
  "Package": "pathRender",
  "Version": "1.80.0",
  "Title": "Render molecular pathways",
  "Author": "Li Long <lilong@isb-sib.ch>",
  "Maintainer": "Vince Carey <stvjc@channing.harvard.edu>",
  "Description": "build graphs from pathway databases, render them by\nRgraphviz.",
  "License": "LGPL",
  "URL": "http://www.bioconductor.org",
  "LazyLoad": "yes",
  "biocViews": "GraphAndNetwork, Pathways, Visualization",
  "Config/pak/sysreqs": "libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:31:30 UTC",
  "RemoteUrl": "https://github.com/bioc/pathRender",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "5229ebd695de12abad736b051373967120ae6b40",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-07 06:40:43 UTC",
    "User": "root"
  },
  "MD5sum": "dc01a32fb45114d0cf3f11c7913cc28a",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "pathRender_1.80.0.tar.gz",
  "_fileid": "24079f5903e470ba6488e3133bb91af8aec1843adc90b4625615296a780bae23",
  "_filesize": 252136,
  "_sha256": "24079f5903e470ba6488e3133bb91af8aec1843adc90b4625615296a780bae23",
  "_created": "2026-06-07T06:40:43.000Z",
  "_published": "2026-06-07T06:45:47.119Z",
  "_jobs": [
    {
      "job": 79938169050,
      "time": 191,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7461567046"
    },
    {
      "job": 79938169037,
      "time": 262,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7461575639"
    },
    {
      "job": 79938169034,
      "time": 206,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7461568971"
    },
    {
      "job": 79938169031,
      "time": 171,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7461564911"
    },
    {
      "job": 79938169040,
      "time": 208,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7461568961"
    },
    {
      "job": 79937917092,
      "time": 282,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461544727"
    },
    {
      "job": 79938169029,
      "time": 142,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461561528"
    },
    {
      "job": 79938169043,
      "time": 165,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7461564259"
    },
    {
      "job": 79938169045,
      "time": 166,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7461564184"
    },
    {
      "job": 79938169039,
      "time": 155,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7461562978"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 15
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/pathRender",
  "_commit": {
    "id": "5229ebd695de12abad736b051373967120ae6b40",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379490
  },
  "_maintainer": {
    "name": "Vince Carey",
    "email": "stvjc@channing.harvard.edu",
    "login": "vjcitn",
    "description": "Professor of Medicine, Channing Division of Network Medicine, Mass General Brigham, Harvard Medical School.",
    "uuid": 4624066
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "graph",
      "role": "Depends"
    },
    {
      "package": "Rgraphviz",
      "role": "Depends"
    },
    {
      "package": "RColorBrewer",
      "role": "Depends"
    },
    {
      "package": "cMAP",
      "role": "Depends"
    },
    {
      "package": "AnnotationDbi",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats4",
      "role": "Depends"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2.db",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.81.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.80.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "graphandnetwork",
    "pathways",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 407,
    "source": "https://www.bioconductor.org/packages/stats/bioc/pathRender"
  },
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pathRender.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "colorNodes",
    "graphcMAP",
    "plot",
    "plotExGraph",
    "pwayRendAttrs",
    "reduceES",
    "rendercMAPPathway"
  ],
  "_help": [
    {
      "page": "coloredGraph-class",
      "title": "Class \"coloredGraph\"",
      "topics": [
        "coloredGraph-class",
        "plot,coloredGraph,ANY-method",
        "pwayRendAttrs"
      ]
    },
    {
      "page": "colorNodes",
      "title": "attach node coloring information to a graphNEL instance",
      "topics": [
        "colorNodes",
        "colorNodes,graphNEL,numeric,character,function-method"
      ]
    },
    {
      "page": "graphcMAP",
      "title": "obtain a graph object corresponding to a cMAP pathway",
      "topics": [
        "graphcMAP"
      ]
    },
    {
      "page": "plotExGraph",
      "title": "plot a gene network, coloring nodes according to relative expression values",
      "topics": [
        "plotExGraph"
      ]
    },
    {
      "page": "pwayGraph-class",
      "title": "Class \"pwayGraph\" - extension to graphNEL for pathway rendering",
      "topics": [
        "plot,pwayGraph,ANY-method",
        "pwayGraph-class"
      ]
    },
    {
      "page": "reduceES",
      "title": "collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene",
      "topics": [
        "reduceES"
      ]
    },
    {
      "page": "rendercMAP",
      "title": "Render pathways from cMAP",
      "topics": [
        "rendercMAPPathway"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cMAP",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "fastmap",
    "generics",
    "glue",
    "graph",
    "httr",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "memoise",
    "mime",
    "openssl",
    "pkgconfig",
    "png",
    "R6",
    "RColorBrewer",
    "Rgraphviz",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "sys",
    "vctrs",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "pathRender.Rnw",
      "filename": "pathRender.pdf",
      "title": "pathRender overview",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 19:55:35",
      "modified": "2013-11-01 19:55:35",
      "commits": 1
    },
    {
      "source": "plotExG.Rnw",
      "filename": "plotExG.pdf",
      "title": "pathway graphs colored by expression map",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 19:55:35",
      "modified": "2013-11-01 19:55:35",
      "commits": 1
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": false,
  "_nocasepkg": "pathrender",
  "_universes": [
    "bioc-release"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.80.0",
      "date": "2026-06-07T06:44:19.000Z",
      "distro": "noble",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "53e3e03ded5b42b156428297080fc26ef9e25765697ccab8ea4d5647c96323a7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.80.0",
      "date": "2026-06-07T06:43:35.000Z",
      "distro": "noble",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "10190feaabba214108bd17adf54c4f641eb960e77b9ff38ab8e7c890a1415ba6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.80.0",
      "date": "2026-06-07T06:43:06.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "587ea7ab38a53e9fd930ceaae6e3524aa6aefb8add5b3f3271cbcd63d511f0a6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.80.0",
      "date": "2026-06-07T06:43:30.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "f8489fb7faebb250f925ff97f02ac4fad7476d5c8f7cf6a80df6d4e5905774d6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.80.0",
      "date": "2026-06-07T06:43:32.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "6832122bdc4b03513d2795f748b2cab35cea13c6fd39f130aabf76f47f6d8702",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.80.0",
      "date": "2026-06-07T06:42:43.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "b6e690d51b94bf3e1f7419d48dea0fb31a0c3c14b7a3039478b4b862abd6e753",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.80.0",
      "date": "2026-06-07T06:42:48.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "323701a8d87508f28b747049545ecbcf2cd42f8f4c952b530a9a89fde08d4c61",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.80.0",
      "date": "2026-06-07T06:42:37.000Z",
      "commit": "5229ebd695de12abad736b051373967120ae6b40",
      "fileid": "1f897cf4997be89195c760e7b23600710f561d10981f8e51cb3876beb964a51e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27085091975"
    }
  ]
}