{
  "_id": "6a37aca73efcd9bda4424b4b",
  "Package": "pvac",
  "Type": "Package",
  "Title": "PCA-based gene filtering for Affymetrix arrays",
  "Version": "1.60.0",
  "Date": "2010-12-30",
  "Author": "Jun Lu and Pierre R. Bushel",
  "Maintainer": "Jun Lu <jlu276@gmail.com>, Pierre R. Bushel\n<bushel@niehs.nih.gov>",
  "Description": "The package contains the function for filtering genes by\nthe proportion of variation accounted for by the first\nprincipal component (PVAC).",
  "License": "LGPL (>= 2.0)",
  "LazyLoad": "yes",
  "biocViews": "Microarray, OneChannel, QualityControl",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:08 UTC",
  "RemoteUrl": "https://github.com/bioc/pvac",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-21 09:15:28 UTC",
    "User": "root"
  },
  "MD5sum": "2a6f7c53135cd4e5db09d8538d2e3403",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "pvac_1.60.0.tar.gz",
  "_fileid": "34c24a5c26596ad4ca9704c562857c2a2bec8f1ec9a18ef78eb3066d8f3c9f18",
  "_filesize": 218130,
  "_sha256": "34c24a5c26596ad4ca9704c562857c2a2bec8f1ec9a18ef78eb3066d8f3c9f18",
  "_created": "2026-06-21T09:15:28.000Z",
  "_published": "2026-06-21T09:19:35.681Z",
  "_jobs": [
    {
      "job": 82557881240,
      "time": 150,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7773857268"
    },
    {
      "job": 82557881237,
      "time": 214,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7773865968"
    },
    {
      "job": 82557881236,
      "time": 199,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7773863914"
    },
    {
      "job": 82557881242,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7773848990"
    },
    {
      "job": 82557881245,
      "time": 118,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7773853122"
    },
    {
      "job": 82557583044,
      "time": 281,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773837207"
    },
    {
      "job": 82557881228,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773851349"
    },
    {
      "job": 82557881250,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7773850584"
    },
    {
      "job": 82557881249,
      "time": 97,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7773850292"
    },
    {
      "job": 82557881254,
      "time": 98,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7773850318"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 4,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/pvac",
  "_commit": {
    "id": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379708
  },
  "_maintainer": {
    "name": "Jun Lu",
    "email": "bushel@niehs.nih.gov",
    "login": "jlu276",
    "description": "",
    "uuid": 24546028
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.8.0",
      "role": "Depends"
    },
    {
      "package": "affy",
      "version": ">= 1.20.0",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "pbapply",
      "role": "Suggests"
    },
    {
      "package": "affydata",
      "role": "Suggests"
    },
    {
      "package": "ALLMLL",
      "role": "Suggests"
    },
    {
      "package": "genefilter",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.61.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.60.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "onechannel",
    "qualitycontrol"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 440,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 1,
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/pvac.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "pvacFilter"
  ],
  "_help": [
    {
      "page": "pvacFilter",
      "title": "Filter genes by the proportion of variation accounted for by the first principal component (PVAC)",
      "topics": [
        "pvacFilter"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "generics",
    "preprocessCore"
  ],
  "_vignettes": [
    {
      "source": "pvac.Rnw",
      "filename": "pvac.pdf",
      "title": "PCA-based gene filtering for Affymetrix GeneChips",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Installation",
        "Gene filtering by PCA",
        "Session"
      ],
      "created": "2013-11-01 20:17:13",
      "modified": "2018-09-07 19:54:52",
      "commits": 3
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "pvac",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/pvac",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.60.0",
      "date": "2026-06-21T09:18:39.000Z",
      "distro": "noble",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "142e1a939de6cac5e02691c701ffe7d799dfbad813573f36f4b6cc466db2d999",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.60.0",
      "date": "2026-06-21T09:18:28.000Z",
      "distro": "noble",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "51b20b3868dcfe9e57915aac78664eeac28361a20660080033e3e508ac793e68",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.60.0",
      "date": "2026-06-21T09:16:45.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "de70c79e08afa2feb98e77dacd50d502c7cfab7202eb07047cd8b0d7d758dfb2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.60.0",
      "date": "2026-06-21T09:17:08.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "1d4b9990a0ca604e84ae9b804b435b775b64bd6134087b7bf74a7241764e7831",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.60.0",
      "date": "2026-06-21T09:17:27.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "7073085b14901461d06edf13909e9128e5476c03d431903e972c89c15580091b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.60.0",
      "date": "2026-06-21T09:16:40.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "57a4c4c746910b4c8fa297f707ef6f44872c5fe71c3e8d929468f23b2cda5a23",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.60.0",
      "date": "2026-06-21T09:16:36.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "87b5f323c9bf73df9b01d289df13657f7d4399bdd48084e028dc89506204e0ee",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.60.0",
      "date": "2026-06-21T09:16:41.000Z",
      "commit": "e02162e035562c9b738bad9fa3ffd2e619e673d4",
      "fileid": "c5a6230972cdf18ec1f217b503eed7d160ded2e3386d5edf7f96681f1abc80fa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899665163"
    }
  ]
}