{ "_id": "6ab38c693d719c1f840910c8", "Package": "qpcrNorm", "Type": "Package", "Title": "Data-driven normalization strategies for high-throughput qPCR\ndata.", "Version": "1.70.0", "Date": "2009-11-08", "Author": "Jessica Mar", "Maintainer": "Jessica Mar ", "Description": "The package contains functions to perform normalization of\nhigh-throughput qPCR data. Basic functions for processing raw\nCt data plus functions to generate diagnostic plots are also\navailable.", "License": "LGPL (>= 2)", "Collate": "qpcrNormsource.R", "biocViews": "Preprocessing, GeneExpression", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:33:50 UTC", "RemoteUrl": "https://github.com/bioc/qpcrNorm", "RemoteRef": "RELEASE_3_23", "RemoteSha": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-23 08:18:57 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "qpcrNorm_1.70.0.tar.gz", "_fileid": "https://r2.ropensci.org/148d4071b8b6b438357d638f8453045a798e7f63826bfe5d8b16da505c1e831d", "_filesize": 607244, "_sha256": "148d4071b8b6b438357d638f8453045a798e7f63826bfe5d8b16da505c1e831d", "_expires": "2027-01-01T08:23:03.000Z", "_created": "2026-09-23T08:18:57.000Z", "_published": "2026-09-23T08:23:05.593Z", "_bioccheck": { "error": 2, "warning": 6, "note": 14 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166", "_status": "success", "_upstream": "https://github.com/bioc/qpcrNorm", "_commit": { "id": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379630 }, "_maintainer": { "name": "Jessica Mar", "email": "jess@jimmy.harvard.edu" }, "_distro": "resolute", "_jobs": [ { "job": 107100980063, "time": 158, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "10739536610" }, { "job": 107100980021, "time": 204, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10739237711" }, { "job": 107100979972, "time": 174, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10738948754" }, { "job": 107100980009, "time": 89, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "10739207655" }, { "job": 107100980006, "time": 92, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "10738554274" }, { "job": 107099851890, "time": 221, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10738663782" }, { "job": 107100979900, "time": 90, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10739306990" }, { "job": 107100980165, "time": 91, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10739790878" }, { "job": 107100980113, "time": 68, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "10739366724" }, { "job": 107100980046, "time": 82, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10739805769" } ], "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "limma", "role": "Depends" }, { "package": "affy", "role": "Depends" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23" } ], "_topics": [ "preprocessing", "geneexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 468, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 561, "source": "https://www.bioconductor.org/packages/stats/bioc/qpcrNorm" }, "_mentions": 2, "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/qpcrNorm.html" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "calcCV", "ctQc", "matrixByPlate", "normQpcrHouseKeepingGenes", "normQpcrQuantile", "normQpcrRankInvariant", "plotVarMean", "readQpcr", "readQpcrBatch", "writeQpcr" ], "_datasets": [ { "name": "qpcrBatch.object", "title": "qpcrBatch instance qpcrBatch.object", "object": "qpcrBatch.object", "file": "qpcrBatch.object.rda", "class": [ "qpcrBatch" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "calcCV", "title": "Calculates the Average Gene-Specific Coefficient of Variation", "topics": [ "calcCV" ] }, { "page": "normQpcrHouseKeepingGenes", "title": "Function for Housekeeping Gene Normalization of qPCR Data.", "topics": [ "normQpcrHouseKeepingGenes" ] }, { "page": "normQpcrQuantile", "title": "Function for Quantile Normalization of qPCR Data.", "topics": [ "normQpcrQuantile" ] }, { "page": "normQpcrRankInvariant", "title": "Function for Rank-Invariant Set Normalization for qPCR Data.", "topics": [ "normQpcrRankInvariant" ] }, { "page": "plotVarMean", "title": "Constructs scatter plot to compare the effects of two normalization algorithms on a qPCR dataset.", "topics": [ "plotVarMean" ] }, { "page": "qpcrBatch-class", "title": "Class qpcrBatch", "topics": [ "normalize, qpcrBatch-class", "qpcrBatch", "qpcrBatch-class" ] }, { "page": "qpcrBatch.object", "title": "qpcrBatch instance qpcrBatch.object", "topics": [ "qpcrBatch.object" ] }, { "page": "readQpcr", "title": "Data Input Function for a Single qPCR Experiment.", "topics": [ "readQpcr" ] }, { "page": "readQpcrBatch", "title": "Data Input Function for a Batch of qPCR Experiments.", "topics": [ "readQpcrBatch" ] }, { "page": "writeQpcr", "title": "Writes qpcrBatch object out to a File.", "topics": [ "writeQpcr" ] } ], "_rundeps": [ "affy", "affyio", "Biobase", "BiocGenerics", "BiocManager", "generics", "limma", "preprocessCore", "statmod" ], "_vignettes": [ { "source": "qpcrNorm.Rnw", "filename": "qpcrNorm.pdf", "title": "qPCR Normalization Example", "engine": "utils::Sweave", "headings": [ "Introduction", "Preprocessing Raw qPCR Data", "Normalizing qPCR Data", "Assessing Performance", "More Info", "Acknowledgements", "References" ], "created": "2013-11-01 20:08:08", "modified": "2013-11-01 20:08:08", "commits": 1 } ], "_score": 3.6020599913279625, "_indexed": false, "_nocasepkg": "qpcrnorm", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/qpcrNorm", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.70.0", "date": "2026-09-23T08:22:18.000Z", "distro": "resolute", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/d6a63fce180f0526021c817014ddf1a439f960989af77d117a8e422e387b0249", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.6.1", "os": "linux", "version": "1.70.0", "date": "2026-09-23T08:21:50.000Z", "distro": "resolute", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/e89d04d06636fe42d06ddb6995eb51c1b5088cdda01e0e3db76fdcb8f4e8f7d6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.5.3", "os": "mac", "version": "1.70.0", "date": "2026-09-23T08:20:47.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/01071d60be1eb1d19b9b1705b579731d494a81855b0e20906e8e110e39410052", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.6.1", "os": "mac", "version": "1.70.0", "date": "2026-09-23T08:20:51.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/8c6672ad88ca25c2b3bda91aa5d9ff702d77edf2d176f23a5bc554939f4947ae", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.6.0", "os": "wasm", "version": "1.70.0", "date": "2026-09-23T08:20:49.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/31f4f522e5bab2640809e8aea331b152424c7f62898a03ca26e47939399240c9", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.7.0", "os": "win", "version": "1.70.0", "date": "2026-09-23T08:20:14.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/ab03a2a6562655c0d5c522763e60d30242723dadcb2732b8f95d68e7284b496b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.5.3", "os": "win", "version": "1.70.0", "date": "2026-09-23T08:20:05.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/9381945d8f7e7ac9e09eac5ade618f4e31ea6213f9ef482869304af91dad0102", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" }, { "r": "4.6.1", "os": "win", "version": "1.70.0", "date": "2026-09-23T08:20:10.000Z", "commit": "987c3913a0f1140e8a330bc2322cc3c8d03bd15e", "fileid": "https://r2.ropensci.org/6ee249123777222ba77081e868bb14c153d0b37eaadade2e73c2df82cf69ba7d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35836073166" } ] }