{
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  "Package": "quantiseqr",
  "Title": "Quantification of the Tumor Immune contexture from RNA-seq data",
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  "Authors@R": "c(\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"aut\", \"cre\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n),\nperson(\ngiven = \"Francesca\", family = \"Finotello\", role = \"aut\",\nemail = \"francesca.finotello@i-med.ac.at\", comment = c(ORCID = \"0000-0003-0712-4658\")\n)\n)",
  "Description": "This package provides a streamlined workflow for the\nquanTIseq method, developed to perform the quantification of\nthe Tumor Immune contexture from RNA-seq data. The\nquantification is performed against the TIL10 signature\n(dissecting the contributions of ten immune cell types),\ncarefully crafted from a collection of human RNA-seq samples.\nThe TIL10 signature has been extensively validated using\nsimulated, flow cytometry, and immunohistochemistry data.",
  "License": "GPL-3",
  "biocViews": "GeneExpression, Software, Transcription, Transcriptomics,\nSequencing, Microarray, Visualization, Annotation,\nImmunoOncology, FeatureExtraction, Classification,\nStatisticalMethod, ExperimentHubSoftware, FlowCytometry",
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  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:55:52 UTC",
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    "User": "root"
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  "Author": "Federico Marini [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3252-7758>),\nFrancesca Finotello [aut] (ORCID:\n<https://orcid.org/0000-0003-0712-4658>)",
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      "title": "Perform quantile normalization of expression data",
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      "title": "Rename gene symbols before deconvolution",
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    },
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      "title": "Run quanTIseq deconvolution",
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