{ "_id": "6accb716a14063b82c3a84c0", "Package": "rBLAST", "Title": "R Interface for the Basic Local Alignment Search Tool", "Description": "Seamlessly interfaces the Basic Local Alignment Search\nTool (BLAST) running locally to search genetic sequence data\nbases. This work was partially supported by grant no.\nR21HG005912 from the National Human Genome Research Institute.", "Version": "1.8.0", "Date": "2025-01-06", "Authors@R": "c(person(\"Michael\", \"Hahsler\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mhahsler@lyle.smu.edu\",\ncomment = c(ORCID = \"0000-0003-2716-1405\")),\nperson(\"Nagar\", \"Anurag\",\nrole = \"aut\"))", "biocViews": "Genetics, Sequencing, SequenceMatching, Alignment,\nDataImport", "URL": "https://github.com/mhahsler/rBLAST", "BugReports": "https://github.com/mhahsler/rBLAST/issues", "SystemRequirements": "ncbi-blast+", "License": "GPL-3", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libicu-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 13:03:02 UTC", "RemoteUrl": "https://github.com/bioc/rBLAST", "RemoteRef": "RELEASE_3_23", "RemoteSha": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-12 10:27:29 UTC", "User": "root" }, "Author": "Michael Hahsler [aut, cre] (ORCID:\n),\nNagar Anurag [aut]", "Maintainer": "Michael Hahsler ", "_user": "bioc-release", "_type": "src", "_file": "rBLAST_1.8.0.tar.gz", "_fileid": "https://r2.ropensci.org/a02a37c9438c60d9d75e5540717cd52f5de363af2b368671b4558c9d4b887422", "_filesize": 130729, "_sha256": "a02a37c9438c60d9d75e5540717cd52f5de363af2b368671b4558c9d4b887422", "_expires": "2027-01-20T10:31:49.000Z", "_created": "2026-10-12T10:27:29.000Z", "_published": "2026-10-12T10:31:50.859Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_upstream": "https://github.com/bioc/rBLAST", "_commit": { "id": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777381382 }, "_maintainer": { "name": "Michael Hahsler", "email": "mhahsler@lyle.smu.edu", "login": "mhahsler", "orcid": "0000-0003-2716-1405", "description": "I develop packages for AI, ML, and Data Science.", "uuid": 14900595 }, "_distro": "resolute", "_jobs": [ { "job": 114768345254, "time": 147, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11741560893" }, { "job": 114768345134, "time": 216, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11741426299" }, { "job": 114768345368, "time": 208, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11740547747" }, { "job": 114768345116, "time": 160, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11740672472" }, { "job": 114768345291, "time": 162, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11741491080" }, { "job": 114767228434, "time": 190, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11741086136" }, { "job": 114768345203, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11740946923" }, { "job": 114768345437, "time": 83, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11740841971" }, { "job": 114768345240, "time": 92, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11741515698" }, { "job": 114768345324, "time": 99, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11740812034" } ], "_registered": true, "_dependencies": [ { "package": "Biostrings", "version": ">= 2.26.2", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.9.4", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.8.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "genetics", "sequencing", "sequencematching", "alignment", "dataimport", "bioconductor", "bioinformatics", "blast-search" ], "_stars": 115, "_contributors": [ { "user": "mhahsler", "count": 81, "uuid": 14900595 }, { "user": "jwokaty", "count": 10, "uuid": 1744257 }, { "user": "jpquast", "count": 1, "uuid": 59307482 }, { "user": "ts404", "count": 1, "uuid": 10216013 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 469, "source": "https://www.bioconductor.org/packages/stats/bioc/rBLAST" }, "_devurl": "https://github.com/mhahsler/rblast", "_searchresults": 143, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/rBLAST.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/mhahsler/rblast", "_realowner": "bioc", "_cranurl": false, "_exports": [ "blast", "blast_db_cache", "blast_db_get", "blast_help", "has_blast", "makeblastdb" ], "_help": [ { "page": "blast", "title": "Basic Local Alignment Search Tool (BLAST)", "concept": [ "blast" ], "topics": [ "BLAST", "blast", "blast_help", "has_blast", "predict.BLAST", "print.BLAST" ] }, { "page": "blast_db_cache", "title": "Manage BLAST Database Downloads using BioCFileCache", "concept": [ "blast" ], "topics": [ "blast_db_cache", "blast_db_get" ] }, { "page": "makeblastdb", "title": "Create BLAST Databases", "concept": [ "blast" ], "topics": [ "makeblastdb" ] } ], "_readme": "https://github.com/bioc/rBLAST/raw/RELEASE_3_23/README.md", "_rundeps": [ "askpass", "BiocFileCache", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "fastmap", "filelock", "generics", "glue", "httr2", "IRanges", "lifecycle", "magrittr", "memoise", "openssl", "pillar", "pkgconfig", "purrr", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector" ], "_vignettes": [ { "source": "blast.Rmd", "filename": "blast.html", "title": "rBLAST: R Interface for the Basic Local Alignment Search Tool", "author": "Michael Hahsler and Anurag Nagar", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "System requirements", "Examples", "Use an existing database", "Create a custom BLAST database", "SessionInfo" ], "created": "2024-03-22 17:26:19", "modified": "2024-04-09 14:56:58", "commits": 4 } ], "_score": 8.170276387258, "_indexed": false, "_nocasepkg": "rblast", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/rBLAST", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.8.0", "date": "2026-10-12T10:30:37.000Z", "distro": "resolute", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/b34b7d3c79cbe704207d5444df8c36da6815c952c723172c9162cc17b650a455", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.6.1", "os": "linux", "version": "1.8.0", "date": "2026-10-12T10:30:34.000Z", "distro": "resolute", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/471011a5d85f7871516612916163fa153dd0b59fdbf619e6e56135258f61b85c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.5.3", "os": "mac", "version": "1.8.0", "date": "2026-10-12T10:29:48.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/d739c4f549faf62734b61664a3453af55deb15e9ff52e460ff88ef554aebe883", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.6.1", "os": "mac", "version": "1.8.0", "date": "2026-10-12T10:29:56.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/2733e8ca196cfd5349ef434f54543df3b8bd7279d0518253916a7556bd28ca6a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.6.0", "os": "wasm", "version": "1.8.0", "date": "2026-10-12T10:29:34.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/411b2d4dda466bfd52a1f3a676c61bdc08b1c3a20d496371f9f2fbcd050f10e5", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.7.0", "os": "win", "version": "1.8.0", "date": "2026-10-12T10:28:41.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/beed51b91195f9df04b2ba4236f09747cfd7ad3a5cf15c999c73ffdff6cc65da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.5.3", "os": "win", "version": "1.8.0", "date": "2026-10-12T10:28:47.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/56599bf1a9aeb6a7c4836dfd9b7519ec75ac52a6575e995bd35512688fda3406", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" }, { "r": "4.6.1", "os": "win", "version": "1.8.0", "date": "2026-10-12T10:28:41.000Z", "commit": "d43c77f0c63ca8569df5f1e8b9bf26557a4009de", "fileid": "https://r2.ropensci.org/e90a44275c28131de13f1cf3fb47f185a594b44ed087fa81d6638a7e53b96d80", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38236121204" } ] }