{
  "_id": "6a1b093b1d7bb097a0a0567a",
  "Package": "rGenomeTracks",
  "Title": "Integerated visualization of epigenomic data",
  "Version": "1.18.0",
  "Authors@R": "person(given = \"Omar\",\nfamily = \"Elashkar\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omar.i.elashkar@gmail.com\",\ncomment = c(ORCID = \"0000-0002-5505-778X\"))",
  "Description": "rGenomeTracks package leverages the power of\npyGenomeTracks software with the interactivity of R.\npyGenomeTracks is a python software that offers robust method\nfor visualizing epigenetic data files like narrowPeak, Hic\nmatrix, TADs and arcs, however though, here is no way currently\nto use it within R interactive session. rGenomeTracks wrapped\nthe whole functionality of pyGenomeTracks with additional\nutilites to make to more pleasant for R users.",
  "Config/reticulate": "list( packages = list( list(package =\n\"pyGenomeTracks\", version = \"3.6\") ) )",
  "License": "GPL-3",
  "SystemRequirements": "pyGenomeTracks (prefered to use\ninstall_pyGenomeTracks())",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.1",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, HiC, Visualization",
  "Config/pak/sysreqs": "libfftw3-dev libglpk-dev libicu-dev libjpeg-dev\nlibpng-dev libtiff-dev libxml2-dev libssl-dev python3\nlibx11-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:56:52 UTC",
  "RemoteUrl": "https://github.com/bioc/rGenomeTracks",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "9ddb793b0112eacfdd422ced5bbe80f65858e62e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 11:00:31 UTC",
    "User": "root"
  },
  "Author": "Omar Elashkar [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5505-778X>)",
  "Maintainer": "Omar Elashkar <omar.i.elashkar@gmail.com>",
  "MD5sum": "9d51030ca696577f424f9e59494430e1",
  "_user": "bioc-release",
  "_type": "src",
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  "_created": "2026-05-30T11:00:31.000Z",
  "_published": "2026-05-30T15:58:51.846Z",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "week": "2025-44",
      "n": 2
    },
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  "_tags": [],
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    {
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      "version": "1.18.0",
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  "_topics": [
    "software",
    "hic",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
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    "source": "https://www.bioconductor.org/packages/stats/bioc/rGenomeTracks"
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/rGenomeTracks.html",
    "manual.pdf"
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  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "epilogos_json",
    "install_pyGenomeTracks",
    "plot_gtracks",
    "track_bed",
    "track_bedgraph",
    "track_bedgraph_matrix",
    "track_bigwig",
    "track_domains",
    "track_epilogos",
    "track_gtf",
    "track_hic_matrix",
    "track_hlines",
    "track_links",
    "track_narrow_peak",
    "track_scalebar",
    "track_spacer",
    "track_vlines",
    "track_x_axis"
  ],
  "_help": [
    {
      "page": "plus-genome_track-genome_track-method",
      "title": "Adding genome_track Objects",
      "topics": [
        "+,genome_track,genome_track-method"
      ]
    },
    {
      "page": "epilogos_json",
      "title": "Generate epilogo json configuration file",
      "topics": [
        "epilogos_json"
      ]
    },
    {
      "page": "install_pyGenomeTracks",
      "title": "Install pyGenomeTracks Dependency",
      "topics": [
        "install_pyGenomeTracks"
      ]
    },
    {
      "page": "plot_gtracks",
      "title": "Plotting genomic tracks",
      "topics": [
        "genome_track",
        "plot_gtracks",
        "plot_gtracks,",
        "plot_gtracks,genome_track-method"
      ]
    },
    {
      "page": "track_bed",
      "title": "Generate bed track",
      "topics": [
        "track_bed"
      ]
    },
    {
      "page": "track_bedgraph",
      "title": "Generate bedgraph track",
      "topics": [
        "track_bedgraph"
      ]
    },
    {
      "page": "track_bedgraph_matrix",
      "title": "Generate bedgraph matrix track",
      "topics": [
        "track_bedgraph_matrix"
      ]
    },
    {
      "page": "track_bigwig",
      "title": "Generate bigwig track",
      "topics": [
        "track_bigwig"
      ]
    },
    {
      "page": "track_domains",
      "title": "Generate domains track",
      "topics": [
        "track_domains"
      ]
    },
    {
      "page": "track_epilogos",
      "title": "Generate epilogos track",
      "topics": [
        "track_epilogos"
      ]
    },
    {
      "page": "track_gtf",
      "title": "Generate gtf track",
      "topics": [
        "track_gtf"
      ]
    },
    {
      "page": "track_hic_matrix",
      "title": "Generate HiC track",
      "topics": [
        "track_hic_matrix"
      ]
    },
    {
      "page": "track_hlines",
      "title": "Generate a track with horizontal lines",
      "topics": [
        "track_hlines"
      ]
    },
    {
      "page": "track_links",
      "title": "Generate links track",
      "topics": [
        "track_links"
      ]
    },
    {
      "page": "track_narrow_peak",
      "title": "Generate narrow peaks track",
      "topics": [
        "track_narrow_peak"
      ]
    },
    {
      "page": "track_scalebar",
      "title": "Generate scalebar track",
      "topics": [
        "track_scalebar"
      ]
    },
    {
      "page": "track_spacer",
      "title": "Generate spacing track",
      "topics": [
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      ]
    },
    {
      "page": "track_vlines",
      "title": "Overlay vertical lines from a bed file",
      "topics": [
        "track_vlines"
      ]
    },
    {
      "page": "track_x_axis",
      "title": "Specify x_axis option for genome_track.",
      "topics": [
        "track_x_axis"
      ]
    }
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