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Discovered motifs can\nthen be merged or extended based on adjacency within MMDs.\nFalse positive rates are estimated and controlled by\npermutation testing.", "biocViews": "MotifDiscovery, GeneRegulation, GeneExpression,\nTranscriptomics, RNASeq, DifferentialExpression,\nFeatureExtraction", "SystemRequirements": "Java (>= 1.8)", "License": "BSD_3_clause + file LICENSE", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "6.1.1", "BugReports": "https://github.com/denniscwylie/sarks/issues", "URL": "https://academic.oup.com/bioinformatics/article-abstract/35/20/3944/5418797,\nhttps://github.com/denniscwylie/sarks", "Config/pak/sysreqs": "make default-jdk zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:52:02 UTC", "RemoteUrl": "https://github.com/bioc/sarks", "RemoteRef": "RELEASE_3_23", "RemoteSha": "4d1c1c7160ba13fc6951e4db1451ae46569e69a9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 07:13:59 UTC", "User": 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