{ "_id": "6ac4c727f511ae58c09a1347", "Package": "scTHI", "Title": "Indentification of significantly activated ligand-receptor\ninteractions across clusters of cells from single-cell RNA\nsequencing data", "Version": "1.24.0", "Authors@R": "c(person(\"Francesca Pia\", \"Caruso\", email = \"francescapia.caruso@gmail.com\", role = c(\"aut\")),\nperson(\"Michele\", \"Ceccarelli\", email = \"m.ceccarelli@gmail.com\", role = c(\"aut\", \"cre\")))", "Description": "scTHI is an R package to identify active pairs of\nligand-receptors from single cells in order to study,among\nothers, tumor-host interactions. scTHI contains a set of\nsignatures to classify cells from the tumor microenvironment.", "License": "GPL-2", "Encoding": "UTF-8", "RoxygenNote": "6.1.1.9000", "VignetteBuilder": "knitr", "biocViews": "Software,SingleCell", "BugReports": "https://github.com/miccec/scTHI/issues", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:52:00 UTC", "RemoteUrl": "https://github.com/bioc/scTHI", "RemoteRef": "RELEASE_3_23", "RemoteSha": "c376b19d99cf2cfe725854341dbce921d137f115", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-06 09:57:25 UTC", "User": "root" }, "Author": "Francesca Pia Caruso [aut],\nMichele Ceccarelli [aut, cre]", "Maintainer": "Michele Ceccarelli ", "_user": "bioc-release", "_type": "src", "_file": "scTHI_1.24.0.tar.gz", "_fileid": "https://r2.ropensci.org/14dfb7b8a062e4be9bc73286acdcd29b294551da17384128c460d483dabe6df5", "_filesize": 615385, "_sha256": "14dfb7b8a062e4be9bc73286acdcd29b294551da17384128c460d483dabe6df5", "_expires": "2027-01-14T10:02:13.000Z", "_created": "2026-10-06T09:57:25.000Z", "_published": "2026-10-06T10:02:15.402Z", "_bioccheck": { "error": 0, "warning": 0, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285", "_status": "success", "_upstream": "https://github.com/bioc/scTHI", "_commit": { "id": "c376b19d99cf2cfe725854341dbce921d137f115", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380720 }, "_maintainer": { "name": "Michele Ceccarelli", "email": "m.ceccarelli@gmail.com", "login": "miccec", "twitter": "@mceccarelli", "description": "\n Professor at University of Miami\n", "uuid": 2706649 }, "_distro": "resolute", "_jobs": [ { "job": 112212656084, "time": 130, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11403406728" }, { "job": 112212656221, "time": 234, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11404046046" }, { "job": 112212656222, "time": 253, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11403561645" }, { "job": 112212656209, "time": 156, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11403841393" }, { "job": 112212656155, "time": 108, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11404315061" }, { "job": 112211432387, "time": 194, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11403701002" }, { "job": 112212656200, "time": 99, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11402799921" }, { "job": 112212656412, "time": 117, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11403371740" }, { "job": 112212656240, "time": 122, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11403606471" }, { "job": 112212656258, "time": 126, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11404360141" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "Rtsne", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "scTHI.data", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.25.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.24.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "software", "singlecell" ], "_stars": 6, "_contributors": [ { "user": "miccec", "count": 65, "uuid": 2706649 }, { "user": "fpcaruso", "count": 1, "uuid": 49145177 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 473, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 366, "source": "https://www.bioconductor.org/packages/stats/bioc/scTHI" }, "_mentions": 1, "_devurl": "https://github.com/miccec/scthi", "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/scTHI.html" ], "_homeurl": "https://github.com/miccec/scthi", "_realowner": "bioc", "_cranurl": false, "_exports": [ "scTHI_plotCluster", "scTHI_plotPairs", "scTHI_plotResult", "scTHI_runTsne", "scTHI_score", "TME_classification", "TME_plot" ], "_help": [ { "page": "scTHI", "title": "single cell Tumor Hist Interaction (scTHI)", "topics": [ "scTHI-package", "scTHI" ] }, { "page": "scTHI_plotCluster", "title": "scTHI_plotCluster", "topics": [ "scTHI_plotCluster" ] }, { "page": "scTHI_plotPairs", "title": "scTHI_plotPairs", "topics": [ "scTHI_plotPairs" ] }, { "page": "scTHI_plotResult", "title": "scTHI_plotResult", "topics": [ "scTHI_plotResult" ] }, { "page": "scTHI_runTsne", "title": "scTHI_runTsne", "topics": [ "scTHI_runTsne" ] }, { "page": "scTHI_score", "title": "scTHI_score", "topics": [ "scTHI_score" ] }, { "page": "TME_classification", "title": "TME_classification", "topics": [ "TME_classification" ] }, { "page": "TME_plot", "title": "TME_plot", "topics": [ "TME_plot" ] } ], "_rundeps": [ "BH", "BiocParallel", "codetools", "cpp11", "formatR", "futile.logger", "futile.options", "lambda.r", "Rcpp", "Rtsne", "snow" ], "_vignettes": [ { "source": "vignette.Rmd", "filename": "vignette.html", "title": "Using scTHI", "author": "Michele Ceccarelli, Francesca Pia Caruso", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Examples", "Analysis of H3K27M glioma from Fibin et al. Science 2018", "Input Data", "Run scTHI.score", "Tumor microenvironment classification", "Session Info", "References" ], "created": "2019-04-16 14:36:13", "modified": "2023-04-20 09:00:06", "commits": 5 } ], "_score": 4.079181246047625, "_indexed": false, "_nocasepkg": "scthi", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/scTHI", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.24.0", "date": "2026-10-06T10:01:00.000Z", "distro": "resolute", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/87caf8412972d14a3b593462a0ea715baf55c0f62773bf270fed10bae6371bd3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.6.1", "os": "linux", "version": "1.24.0", "date": "2026-10-06T10:01:08.000Z", "distro": "resolute", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/a887b3177a22001ed941f6b7236de9fc4d2540f2228716b11af6bca15b335ac1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.5.3", "os": "mac", "version": "1.24.0", "date": "2026-10-06T09:59:32.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/40b86027cf6c39d5ca62d8d00613bcb77346b423179c42b07ef54e4fe5f0c7d5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.6.1", "os": "mac", "version": "1.24.0", "date": "2026-10-06T09:58:55.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/8033c253156111167a34db61d67e672766f82d4703fbfad6ad8b459600e4682a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.6.0", "os": "wasm", "version": "1.24.0", "date": "2026-10-06T09:59:20.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/04eae9c6ea99251bdf44ab4daf36da227a6a7f3fdce72e1e22c8b95eeb345d10", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.7.0", "os": "win", "version": "1.24.0", "date": "2026-10-06T09:58:45.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/578cd43d9d9514144c2832fd62d15b4e9d6d3c4811ce0896abca07004d0dce1b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.5.3", "os": "win", "version": "1.24.0", "date": "2026-10-06T09:58:48.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/90000efb3566b603d87d26ec08d46a65920b5303c7a50f9da8eee8472e9a4f6d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" }, { "r": "4.6.1", "os": "win", "version": "1.24.0", "date": "2026-10-06T09:58:59.000Z", "commit": "c376b19d99cf2cfe725854341dbce921d137f115", "fileid": "https://r2.ropensci.org/29cf6ac9d1997852a40c29c30370969897959428a946c4922300a99a2f124f46", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/37446129285" } ] }