{
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  "Type": "Package",
  "Title": "scanMiR shiny application",
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  "Date": "2026-02-25",
  "Authors@R": "c(\nperson(\"Pierre-Luc\", \"Germain\", email=\"pierre-luc.germain@hest.ethz.ch\",\nrole=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0003-3418-4218\")),\nperson(\"Michael\", \"Soutschek\", email=\"michael.soutschek@hest.ethz.ch\", role=\"aut\"),\nperson(\"Fridolin\", \"Gross\", email=\"fridolin.gross@hest.ethz.ch\", role=\"ctb\"))",
  "Description": "A shiny interface to the scanMiR package. The application\nenables the scanning of transcripts and custom sequences for\nmiRNA binding sites, the visualization of KdModels and binding\nresults, as well as browsing predicted repression data. In\naddition contains the IndexedFst class for fast indexed reading\nof large GenomicRanges or data.frames, and some utilities for\nfacilitating scans and identifying enriched miRNA-target pairs.",
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  "Date/Publication": "2026-04-28 12:56:38 UTC",
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  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "n": 3
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    "shinyapps"
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    "type": "organization",
    "name": "Bioconductor",
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    "ncol",
    "nrow",
    "plotSitesOnUTR",
    "runFullScan",
    "saveIndexedFst",
    "ScanMiRAnno",
    "scanMiRApp",
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    "scanMiRui",
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    "summary"
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      "page": "enrichedMirTxPairs",
      "title": "enrichedMirTxPairs",
      "topics": [
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      ]
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      "page": "fakeTxDb",
      "title": "Example 'fake' TxDb object",
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        "fakeTxDb"
      ]
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      "page": "getTranscriptSequence",
      "title": "getTranscriptSequence",
      "topics": [
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      ]
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      "title": "IndexedFst",
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        "as.data.frame,IndexedFst-method",
        "colnames,IndexedFst-method",
        "head,IndexedFst-method",
        "IndexedFst",
        "IndexedFst-class",
        "length,IndexedFst-method",
        "lengths,IndexedFst-method",
        "names,IndexedFst-method",
        "ncol,IndexedFst-method",
        "nrow,IndexedFst-method",
        "show,IndexedFst-method",
        "summary,IndexedFst-method",
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      ]
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        "saveIndexedFst"
      ]
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    {
      "page": "plotSitesOnUTR",
      "title": "plotSitesOnUTR",
      "topics": [
        "plotSitesOnUTR"
      ]
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    {
      "page": "runFullScan",
      "title": "runFullScan",
      "topics": [
        "runFullScan"
      ]
    },
    {
      "page": "ScanMiRAnno",
      "title": "ScanMiRAnno",
      "topics": [
        "ScanMiRAnno",
        "ScanMiRAnno-class"
      ]
    },
    {
      "page": "ScanMiRAnno-methods",
      "title": "Methods for the 'ScanMiRAnno' class",
      "topics": [
        "ScanMiRAnno-methods",
        "show,ScanMiRAnno-method",
        "summary,ScanMiRAnno-method"
      ]
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    {
      "page": "scanMiRApp",
      "title": "scanMiRApp A wrapper for launching the scanMiRApp shiny app",
      "topics": [
        "scanMiRApp"
      ]
    },
    {
      "page": "scanMiRserver",
      "title": "scanMiRserver",
      "topics": [
        "scanMiRserver"
      ]
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    {
      "page": "scanMiRui",
      "title": "scanMiRui",
      "topics": [
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      ]
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