{ "_id": "6aca1e05fe5cc25786e84db6", "Package": "seventyGeneData", "Type": "Package", "Title": "ExpressionSets from the van't Veer and Van de Vijver breast\ncancer studies", "Version": "1.48.0", "Date": "2013-05-25", "Description": "Gene expression data for the two breast cancer cohorts\npublished by van't Veer and Van de Vijver in 2002.", "biocViews": "ExperimentData, CancerData, BreastCancerData, MicroarrayData", "Authors@R": "c(\nperson(\n\"Luigi\", \"Marchionni\",\nemail = \"lum403@med.cornell.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7336-8071\")\n),\nperson(\n\"Claudio\", \"Zanettini\",\nemail = \"claudio.zanettini@gmail.com\",\nrole = c(\"aut\", \"ctb\")\n),\nperson(\n\"Lucio\", \"Queiroz\",\nemail = \"luciorqueiroz@gmail.com\",\nrole = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0002-6090-1834\")\n)\n)", "License": "Artistic-2.0", "URL": "https://bioconductor.org/packages/release/data/experiment/html/seventyGeneData.html", "LazyLoad": "yes", "Packaged": { "Date": "2026-10-10 11:03:55 UTC", "User": "root" }, "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:25:52 UTC", "RemoteUrl": "https://github.com/bioc/seventyGeneData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "75627e8a76796e7ec2f02e49291d1ffeae67a530", "NeedsCompilation": "no", "Author": "Luigi Marchionni [aut, cre] (ORCID:\n),\nClaudio Zanettini [aut, ctb],\nLucio Queiroz [aut, ctb] (ORCID:\n)", "Maintainer": "Luigi Marchionni ", "_user": "bioc-release", "_type": "src", "_file": "seventyGeneData_1.48.0.tar.gz", "_fileid": "https://r2.ropensci.org/c4d06363ff5a23609ca3224931a9d5352f20b01abaea3b751f5784806843051f", "_filesize": 151989573, "_sha256": "c4d06363ff5a23609ca3224931a9d5352f20b01abaea3b751f5784806843051f", "_expires": "2027-01-18T11:14:05.000Z", "_created": "2026-10-10T11:03:55.000Z", "_published": "2026-10-10T11:14:13.243Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046949477", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 2, "note": 6 }, "_upstream": "https://github.com/bioc/seventyGeneData", "_commit": { "id": "75627e8a76796e7ec2f02e49291d1ffeae67a530", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379152 }, "_maintainer": { "name": "Luigi Marchionni", "email": "lum403@med.cornell.edu", "orcid": "0000-0002-7336-8071" }, "_distro": "resolute", "_jobs": [ { "job": 114199590630, "time": 127, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11668516347" }, { "job": 114199590550, "time": 263, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11668167024" }, { "job": 114199590594, "time": 187, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11668940228" }, { "job": 114198342240, "time": 437, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668920001" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.13.0", "role": "Depends" }, { "package": "Biobase", "role": "Suggests" }, { "package": "limma", "role": "Suggests" }, { "package": "breastCancerNKI", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "cancerdata", "breastcancerdata", "microarraydata", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 4, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/seventyGeneData.html" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "vanDeVijver", "title": "Gene expression, annotations and clinical information for the Van de Vijver cohort", "object": "vanDeVijver", "file": "vanDeVijver.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "vantVeer", "title": "Gene expression, annotations and clinical information for the van't Veer cohort", "object": "vantVeer", "file": "vantVeer.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "seventyGeneData", "title": "Gene expression, annotations and clinical information for the van't Veer and Van de Vijver cohorts", "topics": [ "seventyGeneData-package", "seventyGeneData" ] }, { "page": "vanDeVijver", "title": "Gene expression, annotations and clinical information for the Van de Vijver cohort", "topics": [ "vanDeVijver" ] }, { "page": "vantVeer", "title": "Gene expression, annotations and clinical information for the van't Veer cohort", "topics": [ "vantVeer" ] } ], "_rundeps": [], "_vignettes": [ { "source": "seventyGeneData.Rmd", "filename": "seventyGeneData.html", "title": "The seventyGenesData package: annotated gene expression data from the van't Veer and Van de Vijver breast cancer cohorts", "author": "Luigi Marchionni", "engine": "knitr::rmarkdown", "headings": [ "seventyGeneData Package", "Overview", "Original data sources", "ExpressionSet preparation", "Feature data preparation", "Assemble the vantVeer ExpressionSet object", "Assemble the vanDeVijver ExpressionSet object", "Phenotypic information processing", "Patients' phenotypes in the vantVeer ExpressionSet object", "Patients' phenotypes in the vanDeVijver ExpressionSet object", "Session information", "References" ], "created": "2023-12-02 18:55:36", "modified": "2023-12-02 18:55:36", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "seventygenedata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/seventyGeneData", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.48.0", "date": "2026-10-10T11:12:58.000Z", "distro": "resolute", "commit": "75627e8a76796e7ec2f02e49291d1ffeae67a530", "fileid": "https://r2.ropensci.org/77ae75a91c37e5f565e4d7d059d5a53b5115970c455832530963e12c14a087a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046949477" }, { "r": "4.6.1", "os": "linux", "version": "1.48.0", "date": "2026-10-10T11:11:45.000Z", "distro": "resolute", "commit": "75627e8a76796e7ec2f02e49291d1ffeae67a530", "fileid": "https://r2.ropensci.org/9d08b09f579aec8fbf0de99a93fbca5ee50bf1a4c349693fa4684bc251c3cb9c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046949477" } ] }